Gene detail

Detail information of GWHGAAZE013952

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281048.1	0	PREDICTED: peroxidase 9 [Vitis vinifera]
Swissprot	tr\|Q96512\|PER9_ARATH	0	Peroxidase 9 (Precursor)
trEMBL	tr\|F6H1J9\|F6H1J9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45980.1}
TAIR10	AT1G44970.1	2E-146	Peroxidase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3383514	3385410	+
GWHAAZE00000004	mRNA	3383514	3385410	+
GWHAAZE00000004	exon	3383514	3383786	+
GWHAAZE00000004	exon	3383961	3384152	+
GWHAAZE00000004	exon	3384241	3384406	+
GWHAAZE00000004	exon	3384872	3385410	+
GWHAAZE00000004	CDS	3383514	3383786	+
GWHAAZE00000004	CDS	3383961	3384152	+
GWHAAZE00000004	CDS	3384241	3384406	+
GWHAAZE00000004	CDS	3384872	3385284	+
GWHAAZE00000004	three_prime_UTR	3385285	3385410	+

Transcript Sequence
>GWHTAAZE013966 TTATCAATGGCTTCTCCCAGAGTTCTTTGTAGTCTCATTTTAATAGCTTTCCTCTCTTCTTCTCCTCCTCCCTGCCTAGCTTTCCCAGGGTCTGATTTTGGCTGGGGTGTTGTTCCTGGAGGAGGTTATTCTGGTCTTTTCCCAGATTTCTACCAGTTCTCATGCCCTCAGGCCGATGACATTGTCATGTCTGTCTTGTTTAATGCCATTTCTAAAGACCCTAGAATGGCTGCCTCCTTGCTCAGGCTTCATTTCCATGACTGCTTTGTTCAGGGTTGTGATGCATCAATATTGTTGGATGATAGCCCAACAATAGCTAGCGAAAAGAATTCGCGACCCAACAAGAACTCCATTAGAGGATTTGAAGTGATTGATGAAATCAAGGGTAAGCTAGAAGAAGCATGCCCTCAGACCGTTTCTTGTGCTGACGTTCTTGCCCTTGCTGCTCGTGGTTCCACTGTACTTAGTGGAGGACCAAACTGGGAATTACCTTTAGGCAGAAAGGATTCAAAGACTGCAAGCCTTAGTGGCTCAAACACCAACATTCCGGCCCCAAACTCTACTGTCCAAAACCTATTGACTCTCTTCAATCGCCAAGGCCTCAGTGAAGTAGACCTCGTTGCACTCTCTGGAGGGCATACAATTGGAGTGGCAAGATGTGCTACATTTAAGCAGAGGTTATACAATCAAAATGGGGACAACCAACCAGATGAAACCCTAGAGAGAACTTACTACCATGGATTGAAAACAGTTTGCCCAAGAACTGGCGGTGATAATAACATTTCTCCTCTGGATTTGGCCTCACCTGCTAAATTTGACAACACATACTTCAAGCTAATTTTGTGGGGAAAAGGTCTTCTCAGTTCAGATGAAGTGCTTTTGACAGCGAATGTGGGCAAGACTACGGAATTGGTGAAGAGTTATGCCGAGGATGAGGGTCTCTTCTTTAGCCAGTTTGCTGTATCTATGGTGAAAATGGGGAATATTAGTCCTCTAACTGGTTTCAATGGTGAAGTCAGGAAGAATTGTCACCTTGTTAATTGATTAGTATTAATGTTTAGCTTAGCTATCTACTTGTGGACCGATTGAAGGGTTTGTTTCGTTTTACTACTAATTTTTTGCTGGTATAGTTGGTGTAAAGCCTGTTGTTAATCTGGCTGTGAATGAAGT

Network for GWHGAAZE013952

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00141.24	peroxidase	64	311	4.50E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00430	E1.11.1.7	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0006979	biological_process	response to oxidative stress
GO:0055114	biological_process	oxidation-reduction process
GO:0042744	biological_process	hydrogen peroxide catabolic process
GO:0004601	molecular_function	peroxidase activity
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.044
	SRR3591706	second leaf	1.166
	SRR3591707	mature leaf	0.783
	SRR3591708	Shoot apex	2.647
	SRR3591709	Stem	0.751
	SRR3591710	White floral bud	0.669
	SRR3591711	White flower	2.420
	SRR3591712	Green floral bud	1.036
	SRR3591713	Yellow flower	1.587
SRP173429	SRR8316895	Juvenile bud stage	10.485
	SRR8316896	Juvenile bud stage	4.184
	SRR8316897	Juvenile bud stage	3.242
	SRR8316894	Third green stage	0.754
	SRR8316900	Third green stage	0.594
	SRR8316901	Third green stage	1.159
	SRR8316898	Complete white stage	0.974
	SRR8316899	Complete white stage	2.561
	SRR8316903	Complete white stage	0.548
	SRR8316902	Silver flowering stage	0.816
	SRR8316904	Silver flowering stage	0.888
	SRR8316905	Silver flowering stage	0.519
	SRR8316906	Gold flowering stage	1.918
	SRR8316907	Gold flowering stage	2.570
	SRR8316908	Gold flowering stage	3.206
SRP132670	SRR6706286	Control	0.968
	SRR6706287	Light intensity 50%	0.876
	SRR6706288	Light intensity 20%	0.613
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.062
	CNS0095593	Slightly white alabastrum(diploid) 2	1.951
	CNS0095594	Slightly white alabastrum(diploid) 3	2.970
	CNS0095595	Whole white alabastrum(diploid) 2	0.745
	CNS0095596	Whole white alabastrum(diploid) 3	0.857
	CNS0095597	Whole white alabastrum(diploid) 4	1.441
	CNS0095598	Silvery flower (diploied) 1	0.516
	CNS0095599	Silvery flower (diploied) 2	0.931
	CNS0095600	Silvery flower (diploied) 3	0.867
	CNS0095601	Golden flower (diploid) 1	0.796
	CNS0095602	Golden flower (diploid) 2	0.550
	CNS0095603	Golden flower (diploid) 3	0.693
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.515
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.813
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.252
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.660
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.886
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.199
	CNS0095610	Silvery flower (tetraploid) 1	1.604
	CNS0095611	Silvery flower (tetraploid) 2	1.740
	CNS0095612	Silvery flower (tetraploid) 3	2.459
	CNS0095613	Golden flower (tetraploid) 1	1.214
	CNS0095614	Golden flower (tetraploid) 2	1.942
	CNS0095615	Golden flower (tetraploid) 3	1.203
CRA001975	CRR073297	Stem 1	18.967
	CRR073298	Stem 2	8.956
	CRR073299	Stem 3	28.027
	CRR073300	Leaf 1	1.417
	CRR073301	Leaf 2	2.321
	CRR073302	Leaf 3	0.349
	CRR073303	Juvenile bud 1	0.484
	CRR073304	Juvenile bud 2	0.022
	CRR073305	Juvenile bud 3	0.171
	CRR073306	Third green 1	0.124
	CRR073307	Third green 2	0.364
	CRR073308	Third green 3	0.088
	CRR073309	Second white 1	0.136
	CRR073310	Second white 2	0.184
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.608
	CRR073313	Silver flowering 2	0.440
	CRR073314	Silver flowering 3	0.577
	CRR073315	Gold flowering 1	0.369
	CRR073316	Gold flowering 2	1.247
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.540
	CRR073319	Tawny withering 2	1.246
	CRR073320	Tawny withering 3	2.411