Detail information of GWHGAAZE013953


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007042972.13.0393E-119WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Theobroma cacao]
Swissprottr|O22212|PRP4L_ARATH4E-80U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBLtr|A0A061E961|A0A061E961_THECC1E-119WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related {ECO:0000313|EMBL:EOX98803.1}
TAIR10AT2G41500.14E-51WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene34104033411413+
GWHAAZE00000004mRNA34104033411413+
GWHAAZE00000004exon34104033411413+
GWHAAZE00000004CDS34104033411413+
Transcript Sequence

Network for GWHGAAZE013953

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0273


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08799.12PRP41521802.80E-12
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12662PRPF4, PRP4 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE013953.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 302.557.51012.51517.52022.52527.53032.5353…37.5Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.901
SRR3591706second leaf11.360
SRR3591707mature leaf8.121
SRR3591708Shoot apex15.669
SRR3591709Stem14.840
SRR3591710White floral bud16.695
SRR3591711White flower18.841
SRR3591712Green floral bud15.204
SRR3591713Yellow flower10.171
SRP173429 SRR8316895Juvenile bud stage 10.532
SRR8316896Juvenile bud stage 15.735
SRR8316897Juvenile bud stage 7.137
SRR8316894Third green stage 5.471
SRR8316900Third green stage 14.039
SRR8316901Third green stage 15.765
SRR8316898Complete white stage 6.362
SRR8316899Complete white stage 18.767
SRR8316903Complete white stage 12.859
SRR8316902Silver flowering stage6.025
SRR8316904Silver flowering stage8.474
SRR8316905Silver flowering stage4.117
SRR8316906Gold flowering stage 10.712
SRR8316907Gold flowering stage 11.482
SRR8316908Gold flowering stage 17.016
SRP132670SRR6706286Control34.857
SRR6706287Light intensity 50%30.398
SRR6706288Light intensity 20%32.659
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.342
CNS0095593Slightly white alabastrum(diploid) 25.490
CNS0095594Slightly white alabastrum(diploid) 37.435
CNS0095595Whole white alabastrum(diploid) 25.700
CNS0095596Whole white alabastrum(diploid) 38.264
CNS0095597Whole white alabastrum(diploid) 44.637
CNS0095598Silvery flower (diploied) 114.690
CNS0095599Silvery flower (diploied) 27.352
CNS0095600Silvery flower (diploied) 317.726
CNS0095601Golden flower (diploid) 111.035
CNS0095602Golden flower (diploid) 215.785
CNS0095603Golden flower (diploid) 314.722
CNS0095604Slightly white alabastrum(tetraploid) 18.977
CNS0095605Slightly white alabastrum(tetraploid) 26.390
CNS0095606Slightly white alabastrum(tetraploid) 319.803
CNS0095607Whole white alabastrum(tetraploid) 14.632
CNS0095608Whole white alabastrum(tetraploid) 23.341
CNS0095609Whole white alabastrum(tetraploid) 313.595
CNS0095610Silvery flower (tetraploid) 118.747
CNS0095611Silvery flower (tetraploid) 220.966
CNS0095612Silvery flower (tetraploid) 317.380
CNS0095613Golden flower (tetraploid) 17.049
CNS0095614Golden flower (tetraploid) 213.061
CNS0095615Golden flower (tetraploid) 314.365
CRA001975CRR073297Stem 123.838
CRR073298Stem 219.902
CRR073299Stem 324.038
CRR073300Leaf 121.204
CRR073301Leaf 219.062
CRR073302Leaf 315.812
CRR073303Juvenile bud 116.641
CRR073304Juvenile bud 212.759
CRR073305Juvenile bud 323.045
CRR073306Third green 17.560
CRR073307Third green 26.212
CRR073308Third green 39.846
CRR073309Second white 18.484
CRR073310Second white 28.560
CRR073311Second white 39.226
CRR073312Silver flowering 18.306
CRR073313Silver flowering 27.778
CRR073314Silver flowering 37.416
CRR073315Gold flowering 114.190
CRR073316Gold flowering 225.650
CRR073317Gold flowering 316.266
CRR073318Tawny withering 115.794
CRR073319Tawny withering 210.337
CRR073320Tawny withering 319.813