Detail information of GWHGAAZE013954


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011075373.12.6251E-174PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Sesamum indicum]
Swissprottr|O22212|PRP4L_ARATH5E-145U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBLtr|A0A022PSD0|A0A022PSD0_ERYGU2E-173Uncharacterized protein {ECO:0000313|EMBL:EYU18681.1}
TAIR10AT2G41500.12E-118WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene34169063419161+
GWHAAZE00000004mRNA34169063419161+
GWHAAZE00000004exon34169063417328+
GWHAAZE00000004exon34174163417613+
GWHAAZE00000004exon34177053417786+
GWHAAZE00000004exon34183243418489+
GWHAAZE00000004exon34186023418642+
GWHAAZE00000004exon34191373419161+
GWHAAZE00000004CDS34169063417328+
GWHAAZE00000004CDS34174163417613+
GWHAAZE00000004CDS34177053417786+
GWHAAZE00000004CDS34183243418418+
GWHAAZE00000004three_prime_UTR34184193418489+
GWHAAZE00000004three_prime_UTR34186023418642+
GWHAAZE00000004three_prime_UTR34191373419161+
Transcript Sequence

Network for GWHGAAZE013954

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD407422.70E-05
PF00400.33WD4045834.30E-05
PF00400.33WD40941250.00039
PF00400.33WD401331677.40E-09
PF00400.33WD401732100.039
PF00400.33WD402152521.00E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K12662PRPF4, PRP4 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.016
SRR3591706second leaf10.697
SRR3591707mature leaf15.491
SRR3591708Shoot apex24.115
SRR3591709Stem21.700
SRR3591710White floral bud14.048
SRR3591711White flower26.296
SRR3591712Green floral bud20.351
SRR3591713Yellow flower18.281
SRP173429 SRR8316895Juvenile bud stage 15.892
SRR8316896Juvenile bud stage 21.448
SRR8316897Juvenile bud stage 10.810
SRR8316894Third green stage 6.957
SRR8316900Third green stage 21.524
SRR8316901Third green stage 17.093
SRR8316898Complete white stage 7.659
SRR8316899Complete white stage 27.996
SRR8316903Complete white stage 12.424
SRR8316902Silver flowering stage8.211
SRR8316904Silver flowering stage11.618
SRR8316905Silver flowering stage4.538
SRR8316906Gold flowering stage 13.034
SRR8316907Gold flowering stage 11.144
SRR8316908Gold flowering stage 17.760
SRP132670SRR6706286Control11.807
SRR6706287Light intensity 50%12.022
SRR6706288Light intensity 20%12.387
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.695
CNS0095593Slightly white alabastrum(diploid) 217.715
CNS0095594Slightly white alabastrum(diploid) 316.995
CNS0095595Whole white alabastrum(diploid) 216.313
CNS0095596Whole white alabastrum(diploid) 311.951
CNS0095597Whole white alabastrum(diploid) 413.601
CNS0095598Silvery flower (diploied) 123.973
CNS0095599Silvery flower (diploied) 219.907
CNS0095600Silvery flower (diploied) 319.338
CNS0095601Golden flower (diploid) 120.780
CNS0095602Golden flower (diploid) 222.244
CNS0095603Golden flower (diploid) 317.512
CNS0095604Slightly white alabastrum(tetraploid) 118.331
CNS0095605Slightly white alabastrum(tetraploid) 214.345
CNS0095606Slightly white alabastrum(tetraploid) 324.036
CNS0095607Whole white alabastrum(tetraploid) 19.721
CNS0095608Whole white alabastrum(tetraploid) 27.866
CNS0095609Whole white alabastrum(tetraploid) 317.294
CNS0095610Silvery flower (tetraploid) 123.142
CNS0095611Silvery flower (tetraploid) 226.939
CNS0095612Silvery flower (tetraploid) 322.103
CNS0095613Golden flower (tetraploid) 110.871
CNS0095614Golden flower (tetraploid) 214.742
CNS0095615Golden flower (tetraploid) 318.064
CRA001975CRR073297Stem 122.389
CRR073298Stem 221.420
CRR073299Stem 317.515
CRR073300Leaf 118.690
CRR073301Leaf 217.382
CRR073302Leaf 313.114
CRR073303Juvenile bud 115.840
CRR073304Juvenile bud 213.839
CRR073305Juvenile bud 317.699
CRR073306Third green 15.001
CRR073307Third green 26.400
CRR073308Third green 37.997
CRR073309Second white 110.297
CRR073310Second white 27.082
CRR073311Second white 37.550
CRR073312Silver flowering 17.151
CRR073313Silver flowering 28.109
CRR073314Silver flowering 36.913
CRR073315Gold flowering 120.074
CRR073316Gold flowering 226.913
CRR073317Gold flowering 318.043
CRR073318Tawny withering 116.109
CRR073319Tawny withering 217.636
CRR073320Tawny withering 316.888