Detail information of GWHGAAZE013960


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011084218.10PREDICTED: serine hydroxymethyltransferase 4 [Sesamum indicum]
Swissprottr|O23254|GLYC4_ARATH0Serine hydroxymethyltransferase 4
trEMBLtr|A0A022QS28|A0A022QS28_ERYGU0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}
TAIR10AT4G13930.14E-160serine hydroxymethyltransferase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene35143503515933-
GWHAAZE00000004mRNA35143503515933-
GWHAAZE00000004exon35159053515933-
GWHAAZE00000004exon35148763515491-
GWHAAZE00000004exon35145953514810-
GWHAAZE00000004exon35143503514496-
GWHAAZE00000004CDS35159053515933-
GWHAAZE00000004CDS35148763515491-
GWHAAZE00000004CDS35145953514810-
GWHAAZE00000004CDS35143503514496-
Transcript Sequence

Network for GWHGAAZE013960

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.20SHMT102091.20E-89
PF00464.20SHMT2162874.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0019264biological_processglycine biosynthetic process from serine
GO:0035999biological_processtetrahydrofolate interconversion
GO:0003824molecular_functioncatalytic activity
GO:0004372molecular_functionglycine hydroxymethyltransferase activity
GO:0030170molecular_functionpyridoxal phosphate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf104.002
SRR3591706second leaf61.546
SRR3591707mature leaf24.603
SRR3591708Shoot apex42.265
SRR3591709Stem223.459
SRR3591710White floral bud3.045
SRR3591711White flower2.027
SRR3591712Green floral bud2.932
SRR3591713Yellow flower2.103
SRP173429 SRR8316895Juvenile bud stage 0.518
SRR8316896Juvenile bud stage 0.408
SRR8316897Juvenile bud stage 1.042
SRR8316894Third green stage 0.394
SRR8316900Third green stage 0.425
SRR8316901Third green stage 0.535
SRR8316898Complete white stage 0.428
SRR8316899Complete white stage 1.138
SRR8316903Complete white stage 0.218
SRR8316902Silver flowering stage0.165
SRR8316904Silver flowering stage0.431
SRR8316905Silver flowering stage0.061
SRR8316906Gold flowering stage 0.864
SRR8316907Gold flowering stage 0.186
SRR8316908Gold flowering stage 6.332
SRP132670SRR6706286Control0.557
SRR6706287Light intensity 50%0.922
SRR6706288Light intensity 20%0.776
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.904
CNS0095593Slightly white alabastrum(diploid) 20.364
CNS0095594Slightly white alabastrum(diploid) 31.041
CNS0095595Whole white alabastrum(diploid) 20.968
CNS0095596Whole white alabastrum(diploid) 30.572
CNS0095597Whole white alabastrum(diploid) 40.866
CNS0095598Silvery flower (diploied) 11.646
CNS0095599Silvery flower (diploied) 20.651
CNS0095600Silvery flower (diploied) 30.521
CNS0095601Golden flower (diploid) 10.607
CNS0095602Golden flower (diploid) 20.947
CNS0095603Golden flower (diploid) 30.873
CNS0095604Slightly white alabastrum(tetraploid) 10.307
CNS0095605Slightly white alabastrum(tetraploid) 20.422
CNS0095606Slightly white alabastrum(tetraploid) 30.844
CNS0095607Whole white alabastrum(tetraploid) 10.535
CNS0095608Whole white alabastrum(tetraploid) 20.913
CNS0095609Whole white alabastrum(tetraploid) 30.539
CNS0095610Silvery flower (tetraploid) 10.901
CNS0095611Silvery flower (tetraploid) 20.737
CNS0095612Silvery flower (tetraploid) 30.544
CNS0095613Golden flower (tetraploid) 11.025
CNS0095614Golden flower (tetraploid) 20.286
CNS0095615Golden flower (tetraploid) 30.505
CRA001975CRR073297Stem 11.730
CRR073298Stem 21.370
CRR073299Stem 31.156
CRR073300Leaf 11.879
CRR073301Leaf 21.673
CRR073302Leaf 31.545
CRR073303Juvenile bud 10.994
CRR073304Juvenile bud 20.772
CRR073305Juvenile bud 30.781
CRR073306Third green 10.993
CRR073307Third green 20.493
CRR073308Third green 30.588
CRR073309Second white 10.486
CRR073310Second white 20.821
CRR073311Second white 30.536
CRR073312Silver flowering 10.572
CRR073313Silver flowering 21.142
CRR073314Silver flowering 30.952
CRR073315Gold flowering 10.186
CRR073316Gold flowering 21.007
CRR073317Gold flowering 30.288
CRR073318Tawny withering 10.920
CRR073319Tawny withering 20.484
CRR073320Tawny withering 30.669