Gene detail

Detail information of GWHGAAZE013969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281804.1	0	PREDICTED: mannan endo-1,4-beta-mannosidase 7 [Vitis vinifera]
Swissprot	tr\|Q9FJZ3\|MAN7_ARATH	0	Mannan endo-1,4-beta-mannosidase 7 (Precursor)
trEMBL	tr\|E0CQG0\|E0CQG0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19729.3}
TAIR10	AT5G66460.1	5E-158	Glycosyl hydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3681744	3684826	-
GWHAAZE00000004	mRNA	3681744	3684826	-
GWHAAZE00000004	exon	3681744	3682173	-
GWHAAZE00000004	exon	3682263	3682465	-
GWHAAZE00000004	exon	3682611	3682733	-
GWHAAZE00000004	exon	3684018	3684212	-
GWHAAZE00000004	exon	3684318	3684626	-
GWHAAZE00000004	exon	3684821	3684826	-
GWHAAZE00000004	CDS	3684821	3684826	-
GWHAAZE00000004	CDS	3684318	3684626	-
GWHAAZE00000004	CDS	3684018	3684212	-
GWHAAZE00000004	CDS	3682611	3682733	-
GWHAAZE00000004	CDS	3682263	3682465	-
GWHAAZE00000004	CDS	3681744	3682173	-

Transcript Sequence
>GWHTAAZE013983 ATGGAACATTTGGGTGTGGTTTTGTTGATTCTTTTCTTGTTACAAGAAAAGGGGATATATGCAGCAGGGAATGAGTTCATGAGAAGCAGAGGAGTACAGTTTATGTTAAATGGAAGCCCTTACTATGGAAATGGGTTCAATGCATACTGGTTAATGTATATGGCCTCTGACCCATCTCAGAGAAATAAAGTCTCCTCTGCCTTTGAAGAATCTAAGAAACATGGCCTCACCATTGCAAGAACTTGGGCTTTCAGTGATGGTGGAAACAATCCTCTACAGTACTCCCCTGCTTCTTATAATGAACAAATGTTTCAGGGGTTGGATTTTGTAATAAGTGAAGCAAGGAGTTATGGGATTAAGATAATATTGAGCTTAGTGAATAACTATGAAAACTTTGGAGGGAAGAAACAGTATGTGGATTGGGCAAGAGGTGAAGGTCAGTCTATAACATCTGATGATGATTTCTTTACAAACTCTGTTGTGAAGGGATACTATAAAAACCATATCAAGAGTGTTCTTACAAGAAAAAATAGCATTAACGGAATTGCTTATAAGGATGATCCAACAATAATGGCTTGGGAGCTTATGAATGAACCTCGTTGCACTTCAGATCCATCGGGAAGGACCATACAGGCTTGGATCACAGAGATGGCTTCTTACTTGAAATCCATAGATAGTAATCACTTGCTAGAGGCAGGTTTGGAAGGGTTTTACGGAGAATCTGTGCCTCAAAAGCAACAATTCAATCCAAATTTTCAAATAGGAACAGACTTCATAGCAAACAATCAGATCTCAGACATTGATTTTGCTACAGTCCACTCGTATCCTGATCAGTGGTTAACTGATGCAAATGACGAATCACAACTATCGTTCTTGGATAATTGGCTCAACAATCATATTCAAGATGCTGAGAACATCCTTAAGAAGCCCATTCTCTTCACAGAGTTTGGAAAGTCGGGGAAAGATCCAGGTTTCAGCACCACCCAAAGAGACCAGATGTTTGATACAGTGTACTCGACCATCTATACATCGGCTAGCGGAGGAGGTGCAGCTGCTGGTGGAATGTTCTGGCAACTTCTAACACAAGGAATGGACTCTTTTCGAGATGGGTATGAAATAATATTTCGCGAAAGCCCCTCTACCACTAGTTTAATTGCACTACAGTCCCAAAAACTCATCAAGATTCGAAAAATGTATGAGAGGCTGAAGAATATTGAGAGGTGGAATAGAGCTAGAGAAAGCAGGGGTGGAAATAGTGGAAATTAG

Network for GWHGAAZE013969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00150.19	Cellulase	63	337	2.10E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19355	MAN	Metabolic pathways	map01100
K19355	MAN	Fructose and mannose metabolism	map00051

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.919
	SRR3591706	second leaf	18.935
	SRR3591707	mature leaf	24.123
	SRR3591708	Shoot apex	13.255
	SRR3591709	Stem	33.688
	SRR3591710	White floral bud	5.218
	SRR3591711	White flower	5.804
	SRR3591712	Green floral bud	4.811
	SRR3591713	Yellow flower	0.661
SRP173429	SRR8316895	Juvenile bud stage	11.576
	SRR8316896	Juvenile bud stage	11.140
	SRR8316897	Juvenile bud stage	4.063
	SRR8316894	Third green stage	6.773
	SRR8316900	Third green stage	7.766
	SRR8316901	Third green stage	9.123
	SRR8316898	Complete white stage	1.835
	SRR8316899	Complete white stage	10.785
	SRR8316903	Complete white stage	6.264
	SRR8316902	Silver flowering stage	0.870
	SRR8316904	Silver flowering stage	1.342
	SRR8316905	Silver flowering stage	0.235
	SRR8316906	Gold flowering stage	0.745
	SRR8316907	Gold flowering stage	0.717
	SRR8316908	Gold flowering stage	1.647
SRP132670	SRR6706286	Control	2.070
	SRR6706287	Light intensity 50%	2.042
	SRR6706288	Light intensity 20%	2.230
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.404
	CNS0095593	Slightly white alabastrum(diploid) 2	11.603
	CNS0095594	Slightly white alabastrum(diploid) 3	15.612
	CNS0095595	Whole white alabastrum(diploid) 2	8.173
	CNS0095596	Whole white alabastrum(diploid) 3	2.958
	CNS0095597	Whole white alabastrum(diploid) 4	4.457
	CNS0095598	Silvery flower (diploied) 1	26.430
	CNS0095599	Silvery flower (diploied) 2	13.334
	CNS0095600	Silvery flower (diploied) 3	4.811
	CNS0095601	Golden flower (diploid) 1	9.520
	CNS0095602	Golden flower (diploid) 2	4.480
	CNS0095603	Golden flower (diploid) 3	5.509
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.933
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.965
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.485
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.804
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.046
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.546
	CNS0095610	Silvery flower (tetraploid) 1	2.251
	CNS0095611	Silvery flower (tetraploid) 2	3.164
	CNS0095612	Silvery flower (tetraploid) 3	1.797
	CNS0095613	Golden flower (tetraploid) 1	2.528
	CNS0095614	Golden flower (tetraploid) 2	1.758
	CNS0095615	Golden flower (tetraploid) 3	0.265
CRA001975	CRR073297	Stem 1	4.717
	CRR073298	Stem 2	4.291
	CRR073299	Stem 3	2.551
	CRR073300	Leaf 1	1.459
	CRR073301	Leaf 2	3.798
	CRR073302	Leaf 3	1.304
	CRR073303	Juvenile bud 1	0.970
	CRR073304	Juvenile bud 2	0.380
	CRR073305	Juvenile bud 3	1.553
	CRR073306	Third green 1	0.715
	CRR073307	Third green 2	0.645
	CRR073308	Third green 3	0.735
	CRR073309	Second white 1	0.269
	CRR073310	Second white 2	1.177
	CRR073311	Second white 3	0.527
	CRR073312	Silver flowering 1	0.037
	CRR073313	Silver flowering 2	0.048
	CRR073314	Silver flowering 3	0.160
	CRR073315	Gold flowering 1	6.011
	CRR073316	Gold flowering 2	2.100
	CRR073317	Gold flowering 3	2.324
	CRR073318	Tawny withering 1	10.208
	CRR073319	Tawny withering 2	14.576
	CRR073320	Tawny withering 3	12.282