Gene detail

Detail information of GWHGAAZE013974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282152.1	0	PREDICTED: tubby-like F-box protein 5 [Vitis vinifera]
Swissprot	tr\|Q6Z2G9\|TLP5_ORYSJ	5E-173	Tubby-like F-box protein 5
trEMBL	tr\|F6H054\|F6H054_VITVI	0	Tubby-like F-box protein {ECO:0000256\|RuleBase:RU361125}
TAIR10	AT1G47270.1	9E-130	tubby like protein 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3774626	3776231	+
GWHAAZE00000004	mRNA	3774626	3776231	+
GWHAAZE00000004	exon	3774626	3774955	+
GWHAAZE00000004	exon	3775051	3775138	+
GWHAAZE00000004	exon	3775308	3775440	+
GWHAAZE00000004	exon	3775550	3776231	+
GWHAAZE00000004	CDS	3774626	3774955	+
GWHAAZE00000004	CDS	3775051	3775138	+
GWHAAZE00000004	CDS	3775308	3775440	+
GWHAAZE00000004	CDS	3775550	3776231	+

Transcript Sequence
>GWHTAAZE013988 ATGCCTTTCAAATGCTTCCGAGATGGTCTGGAGAACAAGCCAAGAACACGATCGGACAGGAAGTGTGTTCTTGGGCGAGGAAGATCACATATTGCCCCTGAAAGATACCCATTACCTACAATTGTGCAACAGAGCCGATGGGCAAATATACCATCTGAATTGCTTCTTGATATTATAGCACGTGTAGAAGCCAGTGAGACCTCTTGGCCTGCGCGTAGGGACGTGGTTTCTTGTGCCGCAGTTTGCAGGTCGTGGAGGGAGACCACGAAAGAGATTATTAGGACTCCAGAGCAATGCGGCTTGATCACTTTTCCTACTTCATTAAAGCAGCCCGGACCAAGAGATCTACCTCTTCAATGCTTTATAAAAAGAGAAAGGGCGACAAAAACGTATCGGTTGTATCTCGGCCTGAGCCCTGCACTGGCAGGGGATTCTAGTAAATTGTTGTTGGCAGCAAAAAAGATCAGAAGAGCCATGAAGACAGAATTTCTAATATCCCTTGCTGGAGAAGATTTTTCTCGAGCTAGAGATACTTATGTTGGCAAACTAAGGTCCAATTTCCTTGGGACCAAGTTTTCTATTTACGACAGTCAGCCTCCATGTGAACCTACAATACAATCTAACATTCAGTCGAATAGAAAAGGCAACGTGAAGAAGATATCTTCTAGGGGTATAGCTGGAGCTGGTAATTACAACGTGGCAACAGTATCTTATGAGCTCAATGTACTACGGACCAGAGGACCAAGAAGAATGCAGTGCAACATGCATTTCATTCCCATCTCTTCAATTCAAGAAGGTGGGACCGCCCCTACACCACCAACATTTGAGGGTTCTCCTCCCGATGAGAAATCATCTCCCTTGCCAGTTTCAAAAGGAAAAGACCAAGAACCACCTAGAGCCACTACTAGTCCTCCTGAACCAAGGGAGTCGGTCCAAAACAATAGAGATGTACTCTCCTTGAAAAATAAAGCTCCTAGGTGGCATGAACAGTTACAGTGTTGGTGCCTAAATTTCAAAGGGCGTGTAACCGTGGCCTCTGTCAAGAACTTCCAACTGGTGGCCGCGCTTGATCCGTCCCATCATGTTCCAGCTGCAGAACGAGAGAAGGTGATATTACAATTTGGAAAGATAGGAAAAGACATTTTTACCATGGATTATCGCTACCCACTCTCGGCTTTCCAAGCATTTGCTATATGTTTAAGCAGCTTTGATACTAAACCAGCATGCGAATGA

Network for GWHGAAZE013974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	46	97	2.40E-07
PF01167.19	Tub	110	405	6.30E-101

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	TUB
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.271
	SRR3591706	second leaf	30.631
	SRR3591707	mature leaf	21.513
	SRR3591708	Shoot apex	37.360
	SRR3591709	Stem	23.712
	SRR3591710	White floral bud	92.914
	SRR3591711	White flower	8.852
	SRR3591712	Green floral bud	94.716
	SRR3591713	Yellow flower	7.548
SRP173429	SRR8316895	Juvenile bud stage	18.109
	SRR8316896	Juvenile bud stage	35.304
	SRR8316897	Juvenile bud stage	16.231
	SRR8316894	Third green stage	19.698
	SRR8316900	Third green stage	65.602
	SRR8316901	Third green stage	67.284
	SRR8316898	Complete white stage	9.800
	SRR8316899	Complete white stage	56.805
	SRR8316903	Complete white stage	15.567
	SRR8316902	Silver flowering stage	4.588
	SRR8316904	Silver flowering stage	6.279
	SRR8316905	Silver flowering stage	2.629
	SRR8316906	Gold flowering stage	6.313
	SRR8316907	Gold flowering stage	4.705
	SRR8316908	Gold flowering stage	3.974
SRP132670	SRR6706286	Control	42.351
	SRR6706287	Light intensity 50%	44.249
	SRR6706288	Light intensity 20%	42.524
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.225
	CNS0095593	Slightly white alabastrum(diploid) 2	47.379
	CNS0095594	Slightly white alabastrum(diploid) 3	64.161
	CNS0095595	Whole white alabastrum(diploid) 2	83.845
	CNS0095596	Whole white alabastrum(diploid) 3	94.988
	CNS0095597	Whole white alabastrum(diploid) 4	105.355
	CNS0095598	Silvery flower (diploied) 1	10.918
	CNS0095599	Silvery flower (diploied) 2	15.696
	CNS0095600	Silvery flower (diploied) 3	15.536
	CNS0095601	Golden flower (diploid) 1	8.137
	CNS0095602	Golden flower (diploid) 2	12.581
	CNS0095603	Golden flower (diploid) 3	12.489
	CNS0095604	Slightly white alabastrum(tetraploid) 1	74.507
	CNS0095605	Slightly white alabastrum(tetraploid) 2	77.240
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.063
	CNS0095607	Whole white alabastrum(tetraploid) 1	91.305
	CNS0095608	Whole white alabastrum(tetraploid) 2	98.548
	CNS0095609	Whole white alabastrum(tetraploid) 3	65.832
	CNS0095610	Silvery flower (tetraploid) 1	7.457
	CNS0095611	Silvery flower (tetraploid) 2	13.584
	CNS0095612	Silvery flower (tetraploid) 3	20.444
	CNS0095613	Golden flower (tetraploid) 1	2.992
	CNS0095614	Golden flower (tetraploid) 2	4.482
	CNS0095615	Golden flower (tetraploid) 3	7.016
CRA001975	CRR073297	Stem 1	30.320
	CRR073298	Stem 2	30.284
	CRR073299	Stem 3	18.848
	CRR073300	Leaf 1	60.569
	CRR073301	Leaf 2	51.913
	CRR073302	Leaf 3	32.492
	CRR073303	Juvenile bud 1	45.009
	CRR073304	Juvenile bud 2	34.123
	CRR073305	Juvenile bud 3	52.776
	CRR073306	Third green 1	12.380
	CRR073307	Third green 2	11.816
	CRR073308	Third green 3	13.301
	CRR073309	Second white 1	5.300
	CRR073310	Second white 2	4.248
	CRR073311	Second white 3	3.262
	CRR073312	Silver flowering 1	10.839
	CRR073313	Silver flowering 2	7.294
	CRR073314	Silver flowering 3	6.879
	CRR073315	Gold flowering 1	8.309
	CRR073316	Gold flowering 2	7.153
	CRR073317	Gold flowering 3	6.506
	CRR073318	Tawny withering 1	20.297
	CRR073319	Tawny withering 2	8.956
	CRR073320	Tawny withering 3	19.041