Detail information of GWHGAAZE013976


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011083674.17.67855E-92PREDICTED: zinc-finger homeodomain protein 5 [Sesamum indicum]
Swissprottr|O64722|ZHD3_ARATH9E-63Zinc-finger homeodomain protein 3
trEMBLtr|A0A068UH15|A0A068UH15_COFCA5E-90Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313|EMBL:CDP07504.1}
TAIR10AT1G14440.25E-48homeobox protein 31

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene38305643831352-
GWHAAZE00000004mRNA38305643831352-
GWHAAZE00000004exon38305643831352-
GWHAAZE00000004CDS38305643831352-
Transcript Sequence

Network for GWHGAAZE013976

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04770.13ZF-HD_dimer651178.20E-30
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors Familyzf-HD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE013976.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.457
SRR3591706second leaf5.270
SRR3591707mature leaf0.000
SRR3591708Shoot apex41.579
SRR3591709Stem0.689
SRR3591710White floral bud2.516
SRR3591711White flower4.034
SRR3591712Green floral bud0.649
SRR3591713Yellow flower0.105
SRP173429 SRR8316895Juvenile bud stage 9.370
SRR8316896Juvenile bud stage 3.317
SRR8316897Juvenile bud stage 0.828
SRR8316894Third green stage 0.767
SRR8316900Third green stage 0.112
SRR8316901Third green stage 0.041
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 1.898
SRR8316903Complete white stage 0.275
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.271
SRR6706287Light intensity 50%0.776
SRR6706288Light intensity 20%0.375
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.395
CNS0095593Slightly white alabastrum(diploid) 22.225
CNS0095594Slightly white alabastrum(diploid) 34.301
CNS0095595Whole white alabastrum(diploid) 21.599
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 41.670
CNS0095598Silvery flower (diploied) 113.309
CNS0095599Silvery flower (diploied) 29.936
CNS0095600Silvery flower (diploied) 31.629
CNS0095601Golden flower (diploid) 110.053
CNS0095602Golden flower (diploid) 24.627
CNS0095603Golden flower (diploid) 34.670
CNS0095604Slightly white alabastrum(tetraploid) 13.099
CNS0095605Slightly white alabastrum(tetraploid) 23.312
CNS0095606Slightly white alabastrum(tetraploid) 34.215
CNS0095607Whole white alabastrum(tetraploid) 14.322
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.000
CNS0095611Silvery flower (tetraploid) 21.422
CNS0095612Silvery flower (tetraploid) 30.785
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 121.254
CRR073298Stem 210.953
CRR073299Stem 329.242
CRR073300Leaf 10.151
CRR073301Leaf 20.759
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.091
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.005
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.232
CRR073316Gold flowering 20.834
CRR073317Gold flowering 31.486
CRR073318Tawny withering 10.172
CRR073319Tawny withering 20.685
CRR073320Tawny withering 30.066