Gene detail

Detail information of GWHGAAZE014014

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283395.1	3.14542E-98	PREDICTED: NAC transcription factor NAM-2-like isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	7E-16	NAC domain-containing protein 7
trEMBL	tr\|E0CQ01\|E0CQ01_VITVI	6E-88	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19647.3}
TAIR10	AT1G65910.1	7E-15	NAC domain containing protein 28

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4391004	4394381	+
GWHAAZE00000004	mRNA	4391004	4394381	+
GWHAAZE00000004	exon	4391004	4391166	+
GWHAAZE00000004	exon	4391578	4391804	+
GWHAAZE00000004	exon	4391913	4392086	+
GWHAAZE00000004	exon	4392937	4393249	+
GWHAAZE00000004	exon	4394161	4394381	+
GWHAAZE00000004	CDS	4391004	4391166	+
GWHAAZE00000004	CDS	4391578	4391804	+
GWHAAZE00000004	CDS	4391913	4392086	+
GWHAAZE00000004	CDS	4392937	4393249	+
GWHAAZE00000004	CDS	4394161	4394381	+

Transcript Sequence
>GWHTAAZE014028 ATGTGTCCTCCGGCACCTGTCCCACCTCTGGCTGATATTAGTTTATATTGGAGTGATGAAGAGCTCTTTACATCATTGGACAAAATCATACGGGGATCCCCTGTCCCGGATAATGTGATTCCAGATGTGAATCCTTACCAGATCCAACCCTCTGTTTTACCTGATGGAGTTTGGTACTTAATAAGTTCAGAGGAAAAAAAAGATGCAGAACATGGATTCTGGAAAGCTAAAGGGGAGGCCACTGATATATTCACAAACTCCACCATAACTGGTTGGAGAACTACTCTGGAGTTCTATGAAGGCCAAGTCCCTAATGGCCGAAGAACTGATTGGGTAATGCAGGAGTATGGGATAACTCAAAAAGGACCAGGCGATAAGAGCAAGCCAAAGGATTCCAGATCACTATGCAGAGTCTTCCTTAGTGACAAACAAAGCACAGCTAATGAAATACCCCAAAAAGATGGTGATCGAGATGTAGCTACCCAAAACCACATCAGTTCTTCTTTATCAGTTGTTCCCAACCCTGGAAGTACATCTGGGCAAGGTTCTACGAGTGAGTTCCAGGCGAACAACAGAGATGATGCAACAGGACTGTTGGTGGTGGCCGACAGACTTGAAGATCCTCCTAGAGAAAGTTTGGCAGACTTAGATTATATATTACGAGGTGACTACATGGAATTGGATGATCTTCTTGTTGATCCAGAATCGCCTTCCACCAGTTCAGACAATACAAGTTGTTTGAGCTTGACCTCGGAAGAATGTTTTGATGCATTGGCTCTGTTGAAAGACCTAGAACGGGGGAAGGATACAAGTTTCAAGTACACAGCTTCAGCACCTGCCAAACCAAGAGAGGTGGTTATGCATCCACCCACTTTAGGCTCTCTTAACAATGAAAGTGAAAGAAAGTTGTCACCAGAAGAGACTCGAAAATCTGATAATGTGCAACTTGGTTCAGCTATTGAGGGGGAATGCATGCCTAAAAGACTCCTAGAACATATTAGCATAAGCCAACAAGCAAATCAAGGTGCTTCAAATTCTGAAAAGAAGGCCCATGTCGGCGGTATGAAAAAGCTTAAGAAATATCTCTGCTTCATGTGA

Network for GWHGAAZE014014

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	18	117	8.40E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.001
	SRR3591706	second leaf	18.633
	SRR3591707	mature leaf	34.760
	SRR3591708	Shoot apex	44.313
	SRR3591709	Stem	82.533
	SRR3591710	White floral bud	21.385
	SRR3591711	White flower	33.109
	SRR3591712	Green floral bud	17.656
	SRR3591713	Yellow flower	26.269
SRP173429	SRR8316895	Juvenile bud stage	57.433
	SRR8316896	Juvenile bud stage	58.090
	SRR8316897	Juvenile bud stage	38.983
	SRR8316894	Third green stage	6.707
	SRR8316900	Third green stage	14.191
	SRR8316901	Third green stage	24.476
	SRR8316898	Complete white stage	6.500
	SRR8316899	Complete white stage	47.112
	SRR8316903	Complete white stage	10.189
	SRR8316902	Silver flowering stage	10.320
	SRR8316904	Silver flowering stage	12.085
	SRR8316905	Silver flowering stage	8.355
	SRR8316906	Gold flowering stage	22.871
	SRR8316907	Gold flowering stage	26.983
	SRR8316908	Gold flowering stage	22.380
SRP132670	SRR6706286	Control	11.830
	SRR6706287	Light intensity 50%	14.267
	SRR6706288	Light intensity 20%	12.409
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.258
	CNS0095593	Slightly white alabastrum(diploid) 2	31.880
	CNS0095594	Slightly white alabastrum(diploid) 3	33.535
	CNS0095595	Whole white alabastrum(diploid) 2	23.690
	CNS0095596	Whole white alabastrum(diploid) 3	6.293
	CNS0095597	Whole white alabastrum(diploid) 4	13.304
	CNS0095598	Silvery flower (diploied) 1	41.594
	CNS0095599	Silvery flower (diploied) 2	95.849
	CNS0095600	Silvery flower (diploied) 3	31.772
	CNS0095601	Golden flower (diploid) 1	101.640
	CNS0095602	Golden flower (diploid) 2	66.583
	CNS0095603	Golden flower (diploid) 3	61.879
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.532
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.642
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.204
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.001
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.636
	CNS0095610	Silvery flower (tetraploid) 1	13.051
	CNS0095611	Silvery flower (tetraploid) 2	15.525
	CNS0095612	Silvery flower (tetraploid) 3	10.873
	CNS0095613	Golden flower (tetraploid) 1	10.415
	CNS0095614	Golden flower (tetraploid) 2	14.847
	CNS0095615	Golden flower (tetraploid) 3	7.799
CRA001975	CRR073297	Stem 1	25.243
	CRR073298	Stem 2	18.714
	CRR073299	Stem 3	15.723
	CRR073300	Leaf 1	17.125
	CRR073301	Leaf 2	18.871
	CRR073302	Leaf 3	11.650
	CRR073303	Juvenile bud 1	7.899
	CRR073304	Juvenile bud 2	15.908
	CRR073305	Juvenile bud 3	11.081
	CRR073306	Third green 1	9.635
	CRR073307	Third green 2	6.358
	CRR073308	Third green 3	7.350
	CRR073309	Second white 1	5.233
	CRR073310	Second white 2	8.346
	CRR073311	Second white 3	5.907
	CRR073312	Silver flowering 1	4.621
	CRR073313	Silver flowering 2	4.423
	CRR073314	Silver flowering 3	3.649
	CRR073315	Gold flowering 1	24.022
	CRR073316	Gold flowering 2	43.699
	CRR073317	Gold flowering 3	16.681
	CRR073318	Tawny withering 1	29.409
	CRR073319	Tawny withering 2	48.042
	CRR073320	Tawny withering 3	37.384