Gene detail

Detail information of GWHGAAZE014019

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010254958.1	0	PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 [Nelumbo nucifera]
Swissprot	tr\|Q8L4Y2\|LPAT4_ARATH	0	Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4
trEMBL	tr\|B9GP25\|B9GP25_POPTR	0	Phospholipid/glycerol acyltransferase family protein {ECO:0000313\|EMBL:EEE80488.1}
TAIR10	AT1G75020.2	1E-140	lysophosphatidyl acyltransferase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4491992	4493865	-
GWHAAZE00000004	mRNA	4491992	4493865	-
GWHAAZE00000004	exon	4493297	4493865	-
GWHAAZE00000004	exon	4492635	4492765	-
GWHAAZE00000004	exon	4491992	4492434	-
GWHAAZE00000004	CDS	4493297	4493865	-
GWHAAZE00000004	CDS	4492635	4492765	-
GWHAAZE00000004	CDS	4491992	4492434	-

Transcript Sequence
>GWHTAAZE014033 ATGGAAGTCTGTCAGGCCATCAGCTCTACCAGTGGACTAAAGCACAGCCCTTTGACTCCACTCAGGATTTTGAGGGGTCTGATATGTTTAGTGGTTCTTCTTTTAACCGCATTTATGTTTTTAGTTTACTTCGGACCTGTGGCATTACTCTTGCGCCTTTTCAGCATACATTATAGTAGGAAAGTAACGTCCTTCCTTTTTGGTCTTTGGCTAGCTTTATGGCCCTTCTTATTTGAAAAGATTAACAAGACTAAAGTGACTTTTTCTGGAGACACTGTTCCAGAAAGGGAACGCGTTTTGCTTATTGCTAATCACAGAACTGAGGTTGATTGGATGTATCTATGGGATCTTGCATTGAGGAAGGGGTGTTTGGGCTACATCAAGTATGTCCTCAAGAGCAGTTTGATGAAACTACCTATTTTTGGTTGGGGATTTCATGTATTGGAGTTCATCTCTGTGGAGAGAAAGTGGGAAATTGACGAACCAACCATGCAGCAAATGCTTTCTACTTTTATGGATCCGGTGGATCCACTGTGGCTTGCTGTTTTCCCCGAAGGAACTGATTTTACAGAACAGAAGTGCAAAAGGAGTCAAAAGTTTGCAGCTGAAAACGGATTACCTGTACTGAAGAATGTGCTGCTTCCTAAAACAAGGGGTTTCCATGCTTGTTTGGAAATTCTAAGGGGCTCCTTAGATGCAGTTTATGACGTGACTATTGCATACAAGCACCGATGCCCTTTTTTCATGGACAATGTATTTGGTGTGGACCCTTCAGAAGTTCACATTCATGTTCAACGCTTTCACCTTGGGGAGATCCCAGCATCGGAAAGTGAATCAGCTGATTGGTTGGTAAATAGATTCCACCTCAAGGATAAGTTGCTTTCTGATTTCAGAGCACAAGGCCATTTTCCTTGTCAAGGAACTGAGGGCGAACTCTCAACAGCAAAATGCTTGGTAAATTTCGCACTTGTATTATCTTTGACTGGTGTTTTCACATTTCTTACTTTTTTCTCGTCGATTTGGTTCAAAATATACATAGGTTTATCTTGTGCATCCTTAGCTTCTGCTACCCGTCTTAATATCAGACCATCACCCATCGTGGGTTATGTCAAAACATTGTTATCTCGAAAGAAATCCTTCTAG

Network for GWHGAAZE014019

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01553.22	Acyltransferase	86	242	4.40E-19
PF16076.6	Acyltransf_C	253	321	1.50E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13513	LCLAT1, AGPAT8	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.295
	SRR3591706	second leaf	41.601
	SRR3591707	mature leaf	38.356
	SRR3591708	Shoot apex	35.058
	SRR3591709	Stem	30.580
	SRR3591710	White floral bud	10.658
	SRR3591711	White flower	10.268
	SRR3591712	Green floral bud	15.370
	SRR3591713	Yellow flower	7.806
SRP173429	SRR8316895	Juvenile bud stage	17.667
	SRR8316896	Juvenile bud stage	23.381
	SRR8316897	Juvenile bud stage	21.106
	SRR8316894	Third green stage	7.674
	SRR8316900	Third green stage	33.489
	SRR8316901	Third green stage	26.436
	SRR8316898	Complete white stage	8.008
	SRR8316899	Complete white stage	26.364
	SRR8316903	Complete white stage	14.348
	SRR8316902	Silver flowering stage	7.075
	SRR8316904	Silver flowering stage	7.505
	SRR8316905	Silver flowering stage	0.956
	SRR8316906	Gold flowering stage	5.534
	SRR8316907	Gold flowering stage	3.627
	SRR8316908	Gold flowering stage	6.358
SRP132670	SRR6706286	Control	8.173
	SRR6706287	Light intensity 50%	11.038
	SRR6706288	Light intensity 20%	12.812
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.642
	CNS0095593	Slightly white alabastrum(diploid) 2	38.783
	CNS0095594	Slightly white alabastrum(diploid) 3	23.014
	CNS0095595	Whole white alabastrum(diploid) 2	33.149
	CNS0095596	Whole white alabastrum(diploid) 3	40.281
	CNS0095597	Whole white alabastrum(diploid) 4	28.472
	CNS0095598	Silvery flower (diploied) 1	9.952
	CNS0095599	Silvery flower (diploied) 2	14.845
	CNS0095600	Silvery flower (diploied) 3	10.833
	CNS0095601	Golden flower (diploid) 1	12.697
	CNS0095602	Golden flower (diploid) 2	13.976
	CNS0095603	Golden flower (diploid) 3	13.760
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.214
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.562
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.716
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.821
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.227
	CNS0095609	Whole white alabastrum(tetraploid) 3	54.138
	CNS0095610	Silvery flower (tetraploid) 1	15.514
	CNS0095611	Silvery flower (tetraploid) 2	8.661
	CNS0095612	Silvery flower (tetraploid) 3	10.795
	CNS0095613	Golden flower (tetraploid) 1	3.556
	CNS0095614	Golden flower (tetraploid) 2	10.530
	CNS0095615	Golden flower (tetraploid) 3	6.471
CRA001975	CRR073297	Stem 1	20.822
	CRR073298	Stem 2	15.898
	CRR073299	Stem 3	12.410
	CRR073300	Leaf 1	23.667
	CRR073301	Leaf 2	20.891
	CRR073302	Leaf 3	15.885
	CRR073303	Juvenile bud 1	17.217
	CRR073304	Juvenile bud 2	11.683
	CRR073305	Juvenile bud 3	13.767
	CRR073306	Third green 1	9.641
	CRR073307	Third green 2	10.247
	CRR073308	Third green 3	13.576
	CRR073309	Second white 1	7.217
	CRR073310	Second white 2	3.111
	CRR073311	Second white 3	4.057
	CRR073312	Silver flowering 1	4.975
	CRR073313	Silver flowering 2	4.019
	CRR073314	Silver flowering 3	3.982
	CRR073315	Gold flowering 1	13.656
	CRR073316	Gold flowering 2	15.899
	CRR073317	Gold flowering 3	6.097
	CRR073318	Tawny withering 1	17.096
	CRR073319	Tawny withering 2	19.439
	CRR073320	Tawny withering 3	24.168