Detail information of GWHGAAZE014029


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010320368.10PREDICTED: protein DA1 isoform X1 [Solanum lycopersicum]
Swissprottr|Q8W4F0|DAR1_ARATH0Protein DA1-related 1
trEMBLtr|M1BER7|M1BER7_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400043506}
TAIR10AT4G36860.17E-167LIM domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene46326814639502-
GWHAAZE00000004mRNA46326814639502-
GWHAAZE00000004exon46326814632994-
GWHAAZE00000004exon46331114633169-
GWHAAZE00000004exon46337874633905-
GWHAAZE00000004exon46340414634106-
GWHAAZE00000004exon46342104634422-
GWHAAZE00000004exon46347604634879-
GWHAAZE00000004exon46363614636444-
GWHAAZE00000004exon46366084636717-
GWHAAZE00000004exon46378144637887-
GWHAAZE00000004exon46389254639043-
GWHAAZE00000004exon46391224639199-
GWHAAZE00000004exon46393084639502-
GWHAAZE00000004CDS46393084639502-
GWHAAZE00000004CDS46391224639199-
GWHAAZE00000004CDS46389254639043-
GWHAAZE00000004CDS46378144637887-
GWHAAZE00000004CDS46366084636717-
GWHAAZE00000004CDS46363614636444-
GWHAAZE00000004CDS46347604634879-
GWHAAZE00000004CDS46342104634422-
GWHAAZE00000004CDS46340414634106-
GWHAAZE00000004CDS46337874633905-
GWHAAZE00000004CDS46331114633169-
GWHAAZE00000004CDS46326814632994-
Transcript Sequence

Network for GWHGAAZE014029

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00412.23LIM1562081.90E-06
PF12315.9DA1-like3035101.40E-101
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyOthers

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.223
SRR3591706second leaf7.179
SRR3591707mature leaf4.878
SRR3591708Shoot apex11.186
SRR3591709Stem13.848
SRR3591710White floral bud15.828
SRR3591711White flower14.323
SRR3591712Green floral bud10.531
SRR3591713Yellow flower18.137
SRP173429 SRR8316895Juvenile bud stage 6.675
SRR8316896Juvenile bud stage 13.100
SRR8316897Juvenile bud stage 6.981
SRR8316894Third green stage 5.585
SRR8316900Third green stage 8.321
SRR8316901Third green stage 10.608
SRR8316898Complete white stage 4.810
SRR8316899Complete white stage 14.314
SRR8316903Complete white stage 7.307
SRR8316902Silver flowering stage8.230
SRR8316904Silver flowering stage8.312
SRR8316905Silver flowering stage5.403
SRR8316906Gold flowering stage 21.310
SRR8316907Gold flowering stage 16.912
SRR8316908Gold flowering stage 29.608
SRP132670SRR6706286Control8.045
SRR6706287Light intensity 50%8.069
SRR6706288Light intensity 20%8.357
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.736
CNS0095593Slightly white alabastrum(diploid) 211.725
CNS0095594Slightly white alabastrum(diploid) 313.628
CNS0095595Whole white alabastrum(diploid) 215.110
CNS0095596Whole white alabastrum(diploid) 314.638
CNS0095597Whole white alabastrum(diploid) 414.183
CNS0095598Silvery flower (diploied) 112.685
CNS0095599Silvery flower (diploied) 210.886
CNS0095600Silvery flower (diploied) 310.216
CNS0095601Golden flower (diploid) 110.382
CNS0095602Golden flower (diploid) 212.611
CNS0095603Golden flower (diploid) 310.076
CNS0095604Slightly white alabastrum(tetraploid) 114.261
CNS0095605Slightly white alabastrum(tetraploid) 215.211
CNS0095606Slightly white alabastrum(tetraploid) 313.994
CNS0095607Whole white alabastrum(tetraploid) 113.860
CNS0095608Whole white alabastrum(tetraploid) 213.961
CNS0095609Whole white alabastrum(tetraploid) 310.663
CNS0095610Silvery flower (tetraploid) 117.265
CNS0095611Silvery flower (tetraploid) 29.711
CNS0095612Silvery flower (tetraploid) 314.904
CNS0095613Golden flower (tetraploid) 116.756
CNS0095614Golden flower (tetraploid) 217.140
CNS0095615Golden flower (tetraploid) 314.561
CRA001975CRR073297Stem 19.064
CRR073298Stem 28.599
CRR073299Stem 35.801
CRR073300Leaf 110.628
CRR073301Leaf 210.181
CRR073302Leaf 35.339
CRR073303Juvenile bud 16.871
CRR073304Juvenile bud 24.608
CRR073305Juvenile bud 36.144
CRR073306Third green 16.026
CRR073307Third green 24.809
CRR073308Third green 36.989
CRR073309Second white 13.998
CRR073310Second white 25.202
CRR073311Second white 35.476
CRR073312Silver flowering 110.941
CRR073313Silver flowering 28.192
CRR073314Silver flowering 36.276
CRR073315Gold flowering 14.298
CRR073316Gold flowering 24.494
CRR073317Gold flowering 33.360
CRR073318Tawny withering 19.890
CRR073319Tawny withering 215.176
CRR073320Tawny withering 38.236