Gene detail

Detail information of GWHGAAZE014031

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07580.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FZ70\|FDL1_ARATH	8E-93	F-box/FBD/LRR-repeat protein At1g13570
trEMBL	tr\|A0A068UG81\|A0A068UG81_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07580.1}
TAIR10	AT1G13570.1	2E-78	F-box/RNI-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4662171	4663876	+
GWHAAZE00000004	mRNA	4662171	4663876	+
GWHAAZE00000004	exon	4662171	4662989	+
GWHAAZE00000004	exon	4663182	4663337	+
GWHAAZE00000004	exon	4663595	4663876	+
GWHAAZE00000004	CDS	4662171	4662989	+
GWHAAZE00000004	CDS	4663182	4663337	+
GWHAAZE00000004	CDS	4663595	4663876	+

Transcript Sequence
>GWHTAAZE014045 AAGCGAAGAGAACCACCCAAGGGCCTTTGCAGAATGGAAATGGAAGTAGACATAATCAGCAACCTACCAGCGCATATTATAGACAAGATTTTGTCGCATTTATCACTTAGGGATGCAGTAAGAACAAGTGTCTTATCAAGCAAGTGGAGATACAAATGGGTTACCCTTCCAAATCTTATCTTTGATAATCAGTCCGTATTGGTAGCTTCTCAAGATCAAACGTTCATCAAGAATAAGCTCGTTAACATTGTCGATCACGTTCTTTTACTTCATTCTGGCCCCACACACAAGTTCAAGCTTTCTCATCGAGATCTTCAAGGTGTTAGCGACATTGACCGTTGGATTCTTTTTCTGTCGAGGGGATCTGTAAAAGAGTTTGTACTTGAAATATGGAAGGGTCATCGCTACAAGCTACCTTCTTCTTTGTACTCTTGCCAAAAGCTGATTCACTTGGAGCTTTTTAATTGTCTTGTAAAACCTCCTTCAACGTTTAAGGGTTTTAGGAGCTTGAAAAGCCTCGATCTTCAGCACATTACCATGGGCCAAGATGTATTTGAATATCTGATATCTAGCTGCCCTCTACTTGAGCGGTTGACATTAATGAACTTTGATGGCTTCACCTGTCTTAACATTCATGCTCCAAATCTTCTATTCTTTGATATTGGAGGCGTTTTTGAAGAGGTCAATTTTGAGAATACCTTCCAGCTGGCTATTGTGTCCATTGGCTTATATATAAATGCCGGTTATGATCAAAATCCTCATTTTACTGGTAATATGGTCAAGTTCTTCGCTTCATTGCCCCATCTTCAAAGGCTTGAGTATTTGGCTGCTGGTAAGGTACCTGAAAGATTGCTTAATCCATGTATCGAGCTGAATTACCTCTCTTTACACATAAACTTTGATGATAGAGAAGAGAGTTTGGCGGCCTTATGTCTTCTTAGAAGTTCCCCTAACCTACAAGAGCTTGACATATTGGCTCGGCCAGAGGAACAGAATGCTGTGAGAGCAGTGCCAAACATAATGTCAGAAGATTATCCGTTTTGCCCATTTACTCATTTGCGGCTTATTAAGATAGCTGGTATCTCGGGTATTGCAAGAGAACTGAATTTCATCAACTTTCTGCTGGCAAATTCCCCATTATTGGAGAGGATGACCGTTAAGCCTGCTTCGAACGATGGAGGTTGGGAACTGCTAAAAGAGTTGCTCCGGTTCCGTCGAGCTTCCGTGCTAGCTGAAATTGTTTATGTGGACCCTTAA

Network for GWHGAAZE014031

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	18	51	9.80E-06
PF08387.11	FBD	346	386	4.60E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.765
	SRR3591706	second leaf	10.650
	SRR3591707	mature leaf	7.814
	SRR3591708	Shoot apex	18.156
	SRR3591709	Stem	15.048
	SRR3591710	White floral bud	8.956
	SRR3591711	White flower	12.854
	SRR3591712	Green floral bud	14.162
	SRR3591713	Yellow flower	9.542
SRP173429	SRR8316895	Juvenile bud stage	7.265
	SRR8316896	Juvenile bud stage	10.382
	SRR8316897	Juvenile bud stage	5.683
	SRR8316894	Third green stage	3.825
	SRR8316900	Third green stage	10.773
	SRR8316901	Third green stage	12.279
	SRR8316898	Complete white stage	4.531
	SRR8316899	Complete white stage	18.004
	SRR8316903	Complete white stage	6.513
	SRR8316902	Silver flowering stage	5.007
	SRR8316904	Silver flowering stage	5.983
	SRR8316905	Silver flowering stage	2.383
	SRR8316906	Gold flowering stage	9.370
	SRR8316907	Gold flowering stage	9.922
	SRR8316908	Gold flowering stage	9.983
SRP132670	SRR6706286	Control	2.501
	SRR6706287	Light intensity 50%	3.292
	SRR6706288	Light intensity 20%	3.233
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.551
	CNS0095593	Slightly white alabastrum(diploid) 2	11.376
	CNS0095594	Slightly white alabastrum(diploid) 3	10.438
	CNS0095595	Whole white alabastrum(diploid) 2	7.960
	CNS0095596	Whole white alabastrum(diploid) 3	9.387
	CNS0095597	Whole white alabastrum(diploid) 4	9.403
	CNS0095598	Silvery flower (diploied) 1	13.813
	CNS0095599	Silvery flower (diploied) 2	11.523
	CNS0095600	Silvery flower (diploied) 3	13.453
	CNS0095601	Golden flower (diploid) 1	9.285
	CNS0095602	Golden flower (diploid) 2	14.793
	CNS0095603	Golden flower (diploid) 3	14.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.779
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.064
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.165
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.381
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.036
	CNS0095610	Silvery flower (tetraploid) 1	11.364
	CNS0095611	Silvery flower (tetraploid) 2	13.977
	CNS0095612	Silvery flower (tetraploid) 3	9.782
	CNS0095613	Golden flower (tetraploid) 1	7.735
	CNS0095614	Golden flower (tetraploid) 2	10.430
	CNS0095615	Golden flower (tetraploid) 3	12.203
CRA001975	CRR073297	Stem 1	6.047
	CRR073298	Stem 2	5.929
	CRR073299	Stem 3	6.456
	CRR073300	Leaf 1	3.843
	CRR073301	Leaf 2	4.397
	CRR073302	Leaf 3	4.321
	CRR073303	Juvenile bud 1	3.910
	CRR073304	Juvenile bud 2	3.963
	CRR073305	Juvenile bud 3	5.547
	CRR073306	Third green 1	2.183
	CRR073307	Third green 2	1.248
	CRR073308	Third green 3	2.008
	CRR073309	Second white 1	3.528
	CRR073310	Second white 2	3.463
	CRR073311	Second white 3	2.898
	CRR073312	Silver flowering 1	3.242
	CRR073313	Silver flowering 2	3.283
	CRR073314	Silver flowering 3	1.530
	CRR073315	Gold flowering 1	3.898
	CRR073316	Gold flowering 2	4.678
	CRR073317	Gold flowering 3	4.389
	CRR073318	Tawny withering 1	8.760
	CRR073319	Tawny withering 2	8.044
	CRR073320	Tawny withering 3	6.892