Gene detail

Detail information of GWHGAAZE014038

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009772380.1	0	PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Nicotiana sylvestris]
Swissprot	tr\|Q8RXA7\|SCD1_ARATH	3E-14	DENN domain and WD repeat-containing protein SCD1 {ECO:0000305}
trEMBL	tr\|A0A068UGI7\|A0A068UGI7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07591.1}
TAIR10	AT2G26490.1	1E-160	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4785572	4786822	+
GWHAAZE00000004	mRNA	4785572	4786822	+
GWHAAZE00000004	exon	4785572	4786822	+
GWHAAZE00000004	CDS	4785572	4786822	+

Transcript Sequence
>GWHTAAZE014052 ATGTCATCCGCCGGCACAGAAGATGACCTCCGGAACAGCAGTTACTCCTCGTACGACCCCAACCGCCTCAGCACCGAAGGCTCTCCCATGATGATGTCACCTTGGAACCAAAATACCCCCTTTACCAAATCCAACTGGTCCAAATTCGAAGAAAACAACACCGACACCAACCTCCTCCCTACAAATGGCCTTATCGGCTCTCTCGTCCGCGAAGAAGGCCACATTTATTCCCTGGCAGCTGACGCGGATCTACTCTACACCGGCTCCGACAGCAAAAATATCCGTGTCTGGAAAGACATGAAGGAATTCTCCGCTTTCAAATCCAACAGCGGTTTGGTTAAGGCCATTATTATCTCCGGCGAGAAGATCTTCACCGGTCACCAGGATGGCAAAGTCCGTGTCTGGAAGATCAGCACAAAAAACCCCGGGGCACCCAAGAGAATCGGTACTTTCCCAAAATTCTTCGACATTCTTAAATGCTCTCTTAAACCTAGTAATTACGTCGAGGTTAAGCGTAATCGGACCGGATTATGGATCAAACACTGCGACGCCATTTCTTCTCTCAGCATTAACAAAGAAGAGGGAGTTCTCTATTCGGCCTCGTGGGACCGGACTTTTAAGGTCTGGAAAATCGATAATTCCAAGTGTTTAGAGTCCGTTAAGGCACATGAGGATGCGGTTAATTCTGTCGTTTGTGGGCCCGATGCAATGGTTTTCACAGGATCGGCAGACGGGACGGTGAAGGTATGGAGAAGGGAGGGGCGTGGGAAATCAATTAAGCACAATTACGTTCAAACGCTGTTGAAGCAGGAGTGTGCGGTGACTGCTCTGACTACAAGCGGGTCGGGTTCCGCCTTGTATTGCGGTTCGTCGGACGGGATCGTCAATTACTGGGAGAATGGGAAGGAGTTGACGCACGGTGGGGTCCTCAAGGGTCACAAGCTTGCCGTTCTGTGCCTTGCGGCTGCAGGGAATCTAGTATTCAGCGGATCAGCCGATAAAACCATTTGCGTTTGGAAGAAGGAAGGTTTGGCCCACACGATTCTGTCCGTTTTGACGGGTCATACTGGGCCGGTTAAGTGTTTGGCCGTTGAGAAGGAGCGTGAATCGACGGCCAGTGATCAACGATGGGTGGTGTACAGTGGAAGCCTTGATAAGTCCGTGAAGGTGTGGTCCGTTTCGGACATGGCTATGATGCAACAACAACCGTCCCACGGGTCTTGGGATTCGGTACCGTCGCAGAAGTACTGA

Network for GWHGAAZE014038

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	72	98	0.06
PF00400.33	WD40	181	210	0.2
PF00400.33	WD40	215	250	0.0002
PF00400.33	WD40	308	340	0.0024
PF00400.33	WD40	349	392	1.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.894
	SRR3591706	second leaf	0.231
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	1.751
	SRR3591709	Stem	0.937
	SRR3591710	White floral bud	19.496
	SRR3591711	White flower	4.477
	SRR3591712	Green floral bud	10.162
	SRR3591713	Yellow flower	3.134
SRP173429	SRR8316895	Juvenile bud stage	1.238
	SRR8316896	Juvenile bud stage	0.735
	SRR8316897	Juvenile bud stage	0.049
	SRR8316894	Third green stage	0.503
	SRR8316900	Third green stage	3.858
	SRR8316901	Third green stage	1.724
	SRR8316898	Complete white stage	1.954
	SRR8316899	Complete white stage	2.861
	SRR8316903	Complete white stage	3.494
	SRR8316902	Silver flowering stage	2.467
	SRR8316904	Silver flowering stage	2.075
	SRR8316905	Silver flowering stage	1.462
	SRR8316906	Gold flowering stage	4.336
	SRR8316907	Gold flowering stage	2.444
	SRR8316908	Gold flowering stage	4.926
SRP132670	SRR6706286	Control	2.829
	SRR6706287	Light intensity 50%	3.233
	SRR6706288	Light intensity 20%	2.489
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.346
	CNS0095593	Slightly white alabastrum(diploid) 2	0.350
	CNS0095594	Slightly white alabastrum(diploid) 3	0.480
	CNS0095595	Whole white alabastrum(diploid) 2	5.421
	CNS0095596	Whole white alabastrum(diploid) 3	6.283
	CNS0095597	Whole white alabastrum(diploid) 4	9.273
	CNS0095598	Silvery flower (diploied) 1	1.044
	CNS0095599	Silvery flower (diploied) 2	5.119
	CNS0095600	Silvery flower (diploied) 3	4.598
	CNS0095601	Golden flower (diploid) 1	1.785
	CNS0095602	Golden flower (diploid) 2	3.884
	CNS0095603	Golden flower (diploid) 3	2.480
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.819
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.244
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.349
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.453
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.286
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.118
	CNS0095610	Silvery flower (tetraploid) 1	2.164
	CNS0095611	Silvery flower (tetraploid) 2	3.117
	CNS0095612	Silvery flower (tetraploid) 3	5.921
	CNS0095613	Golden flower (tetraploid) 1	1.215
	CNS0095614	Golden flower (tetraploid) 2	4.092
	CNS0095615	Golden flower (tetraploid) 3	4.571
CRA001975	CRR073297	Stem 1	3.316
	CRR073298	Stem 2	3.300
	CRR073299	Stem 3	5.166
	CRR073300	Leaf 1	10.167
	CRR073301	Leaf 2	10.476
	CRR073302	Leaf 3	6.461
	CRR073303	Juvenile bud 1	12.083
	CRR073304	Juvenile bud 2	17.124
	CRR073305	Juvenile bud 3	14.478
	CRR073306	Third green 1	19.390
	CRR073307	Third green 2	18.073
	CRR073308	Third green 3	23.395
	CRR073309	Second white 1	14.036
	CRR073310	Second white 2	12.684
	CRR073311	Second white 3	20.143
	CRR073312	Silver flowering 1	23.418
	CRR073313	Silver flowering 2	21.556
	CRR073314	Silver flowering 3	16.764
	CRR073315	Gold flowering 1	7.094
	CRR073316	Gold flowering 2	1.750
	CRR073317	Gold flowering 3	4.765
	CRR073318	Tawny withering 1	10.675
	CRR073319	Tawny withering 2	5.942
	CRR073320	Tawny withering 3	6.392