Gene detail

Detail information of GWHGAAZE014044

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07597.1	1.7489E-105	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8RYD1\|REM16_ARATH	3E-56	B3 domain-containing protein REM16
trEMBL	tr\|A0A068UH60\|A0A068UH60_COFCA	7E-106	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07597.1}
TAIR10	AT4G33280.1	1E-40	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4845502	4848239	-
GWHAAZE00000004	mRNA	4845502	4848239	-
GWHAAZE00000004	exon	4848057	4848239	-
GWHAAZE00000004	exon	4846647	4847109	-
GWHAAZE00000004	exon	4846367	4846545	-
GWHAAZE00000004	exon	4845502	4845896	-
GWHAAZE00000004	five_prime_UTR	4848174	4848239	-
GWHAAZE00000004	CDS	4848057	4848173	-
GWHAAZE00000004	CDS	4846647	4847109	-
GWHAAZE00000004	CDS	4846367	4846545	-
GWHAAZE00000004	CDS	4845570	4845896	-
GWHAAZE00000004	three_prime_UTR	4845502	4845569	-

Transcript Sequence
>GWHTAAZE014058 TCTGGGTTTTGTGGGTTCGTATGATCCAATAGGCTAAAAGCTTCACGGTTAGAGTTAGGGCAGAAAATGGGAGAAGAGAGCAGCACCAGCGAAGGCAGAAAATGGGAGGAAGACATCTATTGGACCCATTTCAAATCCCTTCATTTCTTTCTTTCTCTCCCGCACCACTTCCATCACCAGATTGCTATCCCCAAAAAGTTTACCAACAATTTGAGAGAGAAACTAGCAGAATCTGTTGCTCTCAAAGGCCCGAGTGGCGCTACGTGGAACATAGGATTAACAGCAAGTGGGGATACCTTGCTGTTGAAACATGGTTGGGAAGATTTTGTAGCAGACCATTCTTTGAAAGAAGATGATTTCTTGGTCTTCAAATACAACGGGGACTCTCGTTTTGATGTTCTAATATTTGACCCGTTGAGCTGTTGCGAGAAAGAATCATTGTATTTCGTGAGGAAATGTGCGCACATTGAACCTGAAAGTGGATGCTGCACAAAGAGAAATGTTACTGAAGTTACGGATGGCTCTTTTTTTAATGATGTTGTCGGATCCACTCCATCAAGGAAGCTTAGGAAAGATAGTACAACGATGCCGATAATAGCGGAACAATCTCCCCAAGCTAATAGAAGGATTAGTGGGGCTATTAGTAATGGTAAACGAGGGAAGAGTAGCACACTTGGGGGCTGTCGATCTTATTTTGTATCCAATAGAAGACCGGTAACAGAGGAGGAGATAGAAAATACCCTGCAAATGGCACTTGCTGCATCAACTGAAAATGGTTTGGTAGTAGTTATGCGACCCTCGCATGTTTACAAAGGTTTCTTTATGGGGATCTCTAGTGAATGGGCAAATGCCCATCTTCCTCGCAAAAGCCAAGACGTGATTCTTCGTGTGGGGCAGCATACATGGAGCGTTAAACTTTATTGTAGAAATGAGGGTGGATGTGGATTGATGGGTGGTTGGAAGAATTTTGCGGCTGAAAATTTCTTGGAAGAATTTGATGCTTGTCTTTTTGAGCTTGATGATGATGACACAAATGATGAAATAATCATGGATGTTAAGATCTTCCGAGTTGTTGAGGAAGTGGTTCCGTCAAGACTAATGACATCTTCGCCCCCAAATAGCAGAATGCCGTCAAAGCATCCTAGGAGGTAAAACTGGAGTAGTGGCTCTTAAGCTTGCAGTTAGATGTATGTTTTATTCTTAAACTGGGTTTTAAGAAT

Network for GWHGAAZE014044

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0220

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	32	114	1.70E-16
PF02362.22	B3	239	323	5.60E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.930
	SRR3591706	second leaf	2.146
	SRR3591707	mature leaf	3.600
	SRR3591708	Shoot apex	6.654
	SRR3591709	Stem	5.228
	SRR3591710	White floral bud	6.401
	SRR3591711	White flower	5.447
	SRR3591712	Green floral bud	4.275
	SRR3591713	Yellow flower	2.420
SRP173429	SRR8316895	Juvenile bud stage	7.342
	SRR8316896	Juvenile bud stage	9.059
	SRR8316897	Juvenile bud stage	4.748
	SRR8316894	Third green stage	3.292
	SRR8316900	Third green stage	11.684
	SRR8316901	Third green stage	9.328
	SRR8316898	Complete white stage	4.155
	SRR8316899	Complete white stage	12.946
	SRR8316903	Complete white stage	4.952
	SRR8316902	Silver flowering stage	2.189
	SRR8316904	Silver flowering stage	4.310
	SRR8316905	Silver flowering stage	2.419
	SRR8316906	Gold flowering stage	6.004
	SRR8316907	Gold flowering stage	5.703
	SRR8316908	Gold flowering stage	7.016
SRP132670	SRR6706286	Control	5.718
	SRR6706287	Light intensity 50%	6.644
	SRR6706288	Light intensity 20%	7.018
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.175
	CNS0095593	Slightly white alabastrum(diploid) 2	8.094
	CNS0095594	Slightly white alabastrum(diploid) 3	10.087
	CNS0095595	Whole white alabastrum(diploid) 2	8.290
	CNS0095596	Whole white alabastrum(diploid) 3	7.662
	CNS0095597	Whole white alabastrum(diploid) 4	8.695
	CNS0095598	Silvery flower (diploied) 1	9.778
	CNS0095599	Silvery flower (diploied) 2	7.552
	CNS0095600	Silvery flower (diploied) 3	8.209
	CNS0095601	Golden flower (diploid) 1	10.199
	CNS0095602	Golden flower (diploid) 2	9.111
	CNS0095603	Golden flower (diploid) 3	7.770
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.816
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.622
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.845
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.511
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.804
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.694
	CNS0095610	Silvery flower (tetraploid) 1	8.819
	CNS0095611	Silvery flower (tetraploid) 2	11.383
	CNS0095612	Silvery flower (tetraploid) 3	6.639
	CNS0095613	Golden flower (tetraploid) 1	4.455
	CNS0095614	Golden flower (tetraploid) 2	7.497
	CNS0095615	Golden flower (tetraploid) 3	5.270
CRA001975	CRR073297	Stem 1	7.036
	CRR073298	Stem 2	6.159
	CRR073299	Stem 3	5.134
	CRR073300	Leaf 1	5.614
	CRR073301	Leaf 2	5.776
	CRR073302	Leaf 3	4.077
	CRR073303	Juvenile bud 1	5.328
	CRR073304	Juvenile bud 2	2.990
	CRR073305	Juvenile bud 3	5.505
	CRR073306	Third green 1	0.577
	CRR073307	Third green 2	1.400
	CRR073308	Third green 3	1.071
	CRR073309	Second white 1	0.475
	CRR073310	Second white 2	0.696
	CRR073311	Second white 3	1.100
	CRR073312	Silver flowering 1	0.796
	CRR073313	Silver flowering 2	0.851
	CRR073314	Silver flowering 3	0.083
	CRR073315	Gold flowering 1	1.587
	CRR073316	Gold flowering 2	2.857
	CRR073317	Gold flowering 3	3.219
	CRR073318	Tawny withering 1	4.365
	CRR073319	Tawny withering 2	4.077
	CRR073320	Tawny withering 3	4.161