Gene detail

Detail information of GWHGAAZE014046

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008378479.1	PREDICTED: ent-kaurene oxidase, chloroplastic-like [Malus domestica]
Swissprot	tr\|Q93ZB2\|KO1_ARATH	Ent-kaurene oxidase, chloroplastic
trEMBL	tr\|E0CPD1\|E0CPD1_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19588.3}
TAIR10	AT5G25900.1	GA requiring 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4872209	4875164	+
GWHAAZE00000004	mRNA	4872209	4875164	+
GWHAAZE00000004	exon	4872209	4872278	+
GWHAAZE00000004	exon	4872505	4872665	+
GWHAAZE00000004	exon	4873108	4873269	+
GWHAAZE00000004	exon	4873377	4873517	+
GWHAAZE00000004	exon	4873597	4873851	+
GWHAAZE00000004	exon	4873955	4874116	+
GWHAAZE00000004	exon	4874218	4874412	+
GWHAAZE00000004	exon	4874676	4875164	+
GWHAAZE00000004	CDS	4872209	4872278	+
GWHAAZE00000004	CDS	4872505	4872665	+
GWHAAZE00000004	CDS	4873108	4873269	+
GWHAAZE00000004	CDS	4873377	4873517	+
GWHAAZE00000004	CDS	4873597	4873851	+
GWHAAZE00000004	CDS	4873955	4874116	+
GWHAAZE00000004	CDS	4874218	4874412	+
GWHAAZE00000004	CDS	4874676	4874987	+
GWHAAZE00000004	three_prime_UTR	4874988	4875164	+

Transcript Sequence
>GWHTAAZE014060 ATGGCGTTATTACCGCCGGATGTAATTAAAAATATGCAAGCTACTTTGGGAACAGCAGTTGCTTTGGGAGAGGTACCGGGGTTACCGGTGGTAGGGAATCTACTGCAACTGAAGGAGAAGAAACCCCACAAAACATTTACGAAGTGGGCTGAGACATATGGCCCTATCTACTCCATTAAAACCGGCTCCACCTCCATGGTTGTCCTCAACTCCAACCATGTTGCCAAAGAGGCCATGGTAACCAGGTTCCCATCCATCTCAACAAGAAAGCTATCAAATGCATTAAAGATCCTCACTTTGGATAAAACCATGGTTGCAATGAGCGATTATGATGAGTTCCACAAGATGATAAAGCGACATTTACTCACAAATGTTTTGGGACCAAATGCTCAGAAGCGACACCGCAGTAACAGAGACACCCTGGTAGAAAATATGTCGAGTCACTTGCATGCTTCTTTGAAGAACCATCCTCTGGAAGCTGTGAATTTAAGGAAAATATTTGAGTCCGAACTTTTTGGACTATCATTGAAACAAGCCCTAGGAAAGGATGTGGAATCCATTCATGTGGACGACCTCGGAACCACCTTATCGAGAGAGGAAATATTTGAGGTTTTAGTGATTGACCCAATGGAGGGTGCGATCGAGGTAGATTGGAGAGATTTCTTCCCGAATCTTAAATGGATCCCAAATATAAGCTTTGAAAAGAAACTCAAGAGGATGTATACGCGAAGGGAGGCAGTGATGAAAGCCCTGTTTCAAGAGCAGAGAAAACGTATTGCATCTGGCGAGGAAATGAACTGTTATATCGACTACCTATTATCCGAAGCAAAAACACTAACAGATAAACAAATGTCCATGTTGCTTTGGGAGACGATTATAGAAACATCAGACACTACTTTGGTTACCACGGAATGGGCCATGTATGAACTTGCTAAAGATTCAAAGCGGCAGGAGCGGCTCTACCACGAAATTCAAAGTGTTTTCGGTTCTGACAAGATTTCAGAGGAAAAAATTTGTCAGCTTCCTTACTTGTCGGCTGTTTTTCATGAAACTTTGAGAAAGTATAGTCCTGCTCCGATAATTCCTCTAAGATACGTGCATGAAGATACAGAATTAGGAGGGTTTCATATTCCCGCTGGAAGTGAGATTGCTATAAATATTTATGGGTGTAACATGGACCAGAAAGTGTGGGCTAATCCGGAAGAATGGAGGCCGGAGAGGTTTCTAGATGAGGGAAATGATCCGGTGGAACTACACAAGACGATGGCTTTTGGCGGGGGGAAGAGGGTATGTGCTGGTGCGCTTCAAGCAATGTTGATCGCTTGTGTGTCAATCGGGAGGCTTGTACAAGAATTTGAGTGGAGAATAAAAGATGGGGAGGAAGAGAATGTTGATACTCTCGGGCTTACCACACGCAAACTCCAGCCGATGAAAGCATTCATAAAGCCAAGAAATTGAGATGGCACAACCCGAATGTTCGTTATGTAGATCTTAGTTGATGATAGCTGCTAAACCCTGTTCTCTCAGTTCTTTTCTTTTTGTTGCCTTCTAAAATATGTTATTCATGTACGTTTTACAGTTTAGTGCAACAGTTATTCTCTTCAAAAATCCTGACTTCGTATTCATTTCAGGCAT

Network for GWHGAAZE014046

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	26	467	1.80E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04122	GA3, CYP701	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.556
	SRR3591706	second leaf	6.427
	SRR3591707	mature leaf	7.858
	SRR3591708	Shoot apex	7.201
	SRR3591709	Stem	11.056
	SRR3591710	White floral bud	8.374
	SRR3591711	White flower	5.648
	SRR3591712	Green floral bud	13.509
	SRR3591713	Yellow flower	3.023
SRP173429	SRR8316895	Juvenile bud stage	6.264
	SRR8316896	Juvenile bud stage	8.014
	SRR8316897	Juvenile bud stage	4.781
	SRR8316894	Third green stage	3.867
	SRR8316900	Third green stage	9.985
	SRR8316901	Third green stage	9.711
	SRR8316898	Complete white stage	3.016
	SRR8316899	Complete white stage	13.941
	SRR8316903	Complete white stage	4.645
	SRR8316902	Silver flowering stage	1.733
	SRR8316904	Silver flowering stage	1.888
	SRR8316905	Silver flowering stage	0.820
	SRR8316906	Gold flowering stage	2.298
	SRR8316907	Gold flowering stage	1.813
	SRR8316908	Gold flowering stage	2.310
SRP132670	SRR6706286	Control	7.975
	SRR6706287	Light intensity 50%	8.346
	SRR6706288	Light intensity 20%	8.960
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.637
	CNS0095593	Slightly white alabastrum(diploid) 2	12.774
	CNS0095594	Slightly white alabastrum(diploid) 3	10.666
	CNS0095595	Whole white alabastrum(diploid) 2	8.505
	CNS0095596	Whole white alabastrum(diploid) 3	6.869
	CNS0095597	Whole white alabastrum(diploid) 4	7.898
	CNS0095598	Silvery flower (diploied) 1	6.722
	CNS0095599	Silvery flower (diploied) 2	4.701
	CNS0095600	Silvery flower (diploied) 3	2.332
	CNS0095601	Golden flower (diploid) 1	5.240
	CNS0095602	Golden flower (diploid) 2	1.541
	CNS0095603	Golden flower (diploid) 3	1.669
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.494
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.190
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.566
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.670
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.647
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.936
	CNS0095610	Silvery flower (tetraploid) 1	2.893
	CNS0095611	Silvery flower (tetraploid) 2	4.624
	CNS0095612	Silvery flower (tetraploid) 3	8.228
	CNS0095613	Golden flower (tetraploid) 1	3.158
	CNS0095614	Golden flower (tetraploid) 2	3.536
	CNS0095615	Golden flower (tetraploid) 3	3.234
CRA001975	CRR073297	Stem 1	7.257
	CRR073298	Stem 2	5.454
	CRR073299	Stem 3	3.953
	CRR073300	Leaf 1	8.518
	CRR073301	Leaf 2	7.235
	CRR073302	Leaf 3	3.513
	CRR073303	Juvenile bud 1	5.003
	CRR073304	Juvenile bud 2	1.377
	CRR073305	Juvenile bud 3	5.649
	CRR073306	Third green 1	1.504
	CRR073307	Third green 2	0.570
	CRR073308	Third green 3	1.682
	CRR073309	Second white 1	0.560
	CRR073310	Second white 2	0.554
	CRR073311	Second white 3	0.421
	CRR073312	Silver flowering 1	0.432
	CRR073313	Silver flowering 2	0.163
	CRR073314	Silver flowering 3	0.079
	CRR073315	Gold flowering 1	2.684
	CRR073316	Gold flowering 2	3.229
	CRR073317	Gold flowering 3	1.360
	CRR073318	Tawny withering 1	4.116
	CRR073319	Tawny withering 2	9.208
	CRR073320	Tawny withering 3	5.993