Gene detail

Detail information of GWHGAAZE014048

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002284120.1	4.127E-146	PREDICTED: thylakoidal processing peptidase 1, chloroplastic [Vitis vinifera]
Swissprot	tr\|O04348\|TPP1_ARATH	3E-116	Thylakoidal processing peptidase 1, chloroplastic (Precursor)
trEMBL	tr\|A5AT48\|A5AT48_VITVI	2E-146	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78280.1}
TAIR10	AT2G30440.1	3E-83	thylakoid processing peptide

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4899392	4902733	+
GWHAAZE00000004	mRNA	4899392	4902733	+
GWHAAZE00000004	exon	4899392	4900051	+
GWHAAZE00000004	exon	4901860	4901928	+
GWHAAZE00000004	exon	4902043	4902111	+
GWHAAZE00000004	exon	4902205	4902291	+
GWHAAZE00000004	exon	4902401	4902468	+
GWHAAZE00000004	exon	4902613	4902733	+
GWHAAZE00000004	CDS	4899392	4900051	+
GWHAAZE00000004	CDS	4901860	4901928	+
GWHAAZE00000004	CDS	4902043	4902111	+
GWHAAZE00000004	CDS	4902205	4902291	+
GWHAAZE00000004	CDS	4902401	4902468	+
GWHAAZE00000004	CDS	4902613	4902733	+

Transcript Sequence
>GWHTAAZE014062 ATGGCGATCCGATTCGCAGTTAATTACTCGGGCTATGCCGCCCAAAACCTCGCCTCCTCCGCCACATCCAAAGTCAGCAACTGCCGATTCTTCGGCGAGTCTATGGCAAGGCGCTTTTTCCCCAATCCCAAACTAGATGGGGAACCTACCGCCGGTAACTACCACTACGCCTCCGAGTTCCGGCGCTCAAAGCCGAGTTCCTTGTCTCGGAACTCGCCTTCTTCTATGTATACATCTCTCGCCGGTGAAGAAATTTCCAGTTCTAGTTCCCCTCCGCTTGTTCTGATTTCATTGTTGAAGTCTTCGGCCGGGGTTTTTGGGGCTTCTTCAGTGGGGACTATCGGAATTTCTCCGTTAAAGGCCTCTTCGGCCGTTCAAATAGGATCGATGTCGTTACCGCACGTTAATGAGGTGGACAAAGGCGGAACACTGTGTAGTGAGGGCGAAGAGAGTGGTGGTTCGATGTTTATGAGGAAGAGTGTAGAGAGGAGCAATTGGCTCTCGAAGTTGTTGAATTGTTGTTCGGATGATGCAAAGGCTGTCTTCACGGCTTTGAGTGTTAACATTCTTTTCCGTTCATCCTTGGCAGAACCCAAATCCATCCCTTCGGCTTCTATGTACCCTACTCTGGATGTGGGTGATCGCATACTAGCAGAGAAGGTTTCATATATTTTCAGGCAGCCTGAAGTTTCGGACATAGTTATATTCAAGGTGCCTTCCTTTCTTCAGGCATATGGTTGTAGGCTGGGTGAAGTCTTTATAAAAAGAGTTGTAGCCAAGGCCGGAGACTACGTCGAAGTTCGTGATGGTAAATTAATAGTGAACAATAATGTTCAAGACGAAGAATACATTTTGGAGCCACTTGCTTATGAAATGGATCCGCAGGTTGTGCCTGAAGGATGTGTATTTGTGTTGGGGGACAACCGTAATAACAGTTTTGATTCACATAACTGGGGTCCGCTTCCTATCGAAAATATTTTGGGGAGATCGGTGCTCCGGTATTGGCCCCCATCCAAAGTATCCGACACTATATACGAACCACATTCAAGAAAAAAAGATGTTGCAGTGTCTTGA

Network for GWHGAAZE014048

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10502.10	Peptidase_S26	178	335	2.00E-40

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03100	lepB	Protein export	map03060

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0016020	cellular_component	membrane
GO:0016021	cellular_component	integral component of membrane
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	127.196
	SRR3591706	second leaf	59.507
	SRR3591707	mature leaf	67.259
	SRR3591708	Shoot apex	84.248
	SRR3591709	Stem	149.073
	SRR3591710	White floral bud	148.504
	SRR3591711	White flower	204.952
	SRR3591712	Green floral bud	156.319
	SRR3591713	Yellow flower	269.642
SRP173429	SRR8316895	Juvenile bud stage	60.227
	SRR8316896	Juvenile bud stage	68.702
	SRR8316897	Juvenile bud stage	47.762
	SRR8316894	Third green stage	38.142
	SRR8316900	Third green stage	123.923
	SRR8316901	Third green stage	138.228
	SRR8316898	Complete white stage	79.931
	SRR8316899	Complete white stage	228.360
	SRR8316903	Complete white stage	114.462
	SRR8316902	Silver flowering stage	76.427
	SRR8316904	Silver flowering stage	94.943
	SRR8316905	Silver flowering stage	57.376
	SRR8316906	Gold flowering stage	198.219
	SRR8316907	Gold flowering stage	170.653
	SRR8316908	Gold flowering stage	233.789
SRP132670	SRR6706286	Control	135.470
	SRR6706287	Light intensity 50%	147.359
	SRR6706288	Light intensity 20%	155.265
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	63.070
	CNS0095593	Slightly white alabastrum(diploid) 2	68.182
	CNS0095594	Slightly white alabastrum(diploid) 3	51.779
	CNS0095595	Whole white alabastrum(diploid) 2	68.555
	CNS0095596	Whole white alabastrum(diploid) 3	62.320
	CNS0095597	Whole white alabastrum(diploid) 4	72.229
	CNS0095598	Silvery flower (diploied) 1	98.414
	CNS0095599	Silvery flower (diploied) 2	89.146
	CNS0095600	Silvery flower (diploied) 3	231.896
	CNS0095601	Golden flower (diploid) 1	123.064
	CNS0095602	Golden flower (diploid) 2	276.899
	CNS0095603	Golden flower (diploid) 3	266.889
	CNS0095604	Slightly white alabastrum(tetraploid) 1	64.611
	CNS0095605	Slightly white alabastrum(tetraploid) 2	51.459
	CNS0095606	Slightly white alabastrum(tetraploid) 3	107.672
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.206
	CNS0095608	Whole white alabastrum(tetraploid) 2	51.609
	CNS0095609	Whole white alabastrum(tetraploid) 3	102.129
	CNS0095610	Silvery flower (tetraploid) 1	194.405
	CNS0095611	Silvery flower (tetraploid) 2	221.709
	CNS0095612	Silvery flower (tetraploid) 3	157.220
	CNS0095613	Golden flower (tetraploid) 1	183.861
	CNS0095614	Golden flower (tetraploid) 2	252.483
	CNS0095615	Golden flower (tetraploid) 3	283.936
CRA001975	CRR073297	Stem 1	95.032
	CRR073298	Stem 2	92.773
	CRR073299	Stem 3	95.511
	CRR073300	Leaf 1	141.431
	CRR073301	Leaf 2	135.650
	CRR073302	Leaf 3	141.767
	CRR073303	Juvenile bud 1	195.847
	CRR073304	Juvenile bud 2	208.328
	CRR073305	Juvenile bud 3	198.648
	CRR073306	Third green 1	116.265
	CRR073307	Third green 2	103.452
	CRR073308	Third green 3	102.556
	CRR073309	Second white 1	165.562
	CRR073310	Second white 2	124.118
	CRR073311	Second white 3	105.742
	CRR073312	Silver flowering 1	131.604
	CRR073313	Silver flowering 2	143.130
	CRR073314	Silver flowering 3	127.199
	CRR073315	Gold flowering 1	60.223
	CRR073316	Gold flowering 2	76.713
	CRR073317	Gold flowering 3	76.895
	CRR073318	Tawny withering 1	131.265
	CRR073319	Tawny withering 2	148.285
	CRR073320	Tawny withering 3	113.627