Gene detail

Detail information of GWHGAAZE014061

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011013046.1	PREDICTED: uncharacterized protein LOC105117173 isoform X1 [Populus euphratica]
trEMBL	tr\|F6H1E0\|F6H1E0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45875.1}
TAIR10	AT5G36210.1	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	5044615	5051163	+
GWHAAZE00000004	mRNA	5044615	5051163	+
GWHAAZE00000004	exon	5044615	5044811	+
GWHAAZE00000004	exon	5044973	5045172	+
GWHAAZE00000004	exon	5045399	5045503	+
GWHAAZE00000004	exon	5045638	5045709	+
GWHAAZE00000004	exon	5046844	5046991	+
GWHAAZE00000004	exon	5047159	5047241	+
GWHAAZE00000004	exon	5048042	5048097	+
GWHAAZE00000004	exon	5048224	5048360	+
GWHAAZE00000004	exon	5048478	5048568	+
GWHAAZE00000004	exon	5048655	5048720	+
GWHAAZE00000004	exon	5048850	5049072	+
GWHAAZE00000004	exon	5049822	5049923	+
GWHAAZE00000004	exon	5050187	5050272	+
GWHAAZE00000004	exon	5050369	5050491	+
GWHAAZE00000004	exon	5050667	5050736	+
GWHAAZE00000004	exon	5050817	5050908	+
GWHAAZE00000004	exon	5051089	5051163	+
GWHAAZE00000004	CDS	5044615	5044811	+
GWHAAZE00000004	CDS	5044973	5045172	+
GWHAAZE00000004	CDS	5045399	5045503	+
GWHAAZE00000004	CDS	5045638	5045709	+
GWHAAZE00000004	CDS	5046844	5046991	+
GWHAAZE00000004	CDS	5047159	5047241	+
GWHAAZE00000004	CDS	5048042	5048097	+
GWHAAZE00000004	CDS	5048224	5048360	+
GWHAAZE00000004	CDS	5048478	5048568	+
GWHAAZE00000004	CDS	5048655	5048720	+
GWHAAZE00000004	CDS	5048850	5049072	+
GWHAAZE00000004	CDS	5049822	5049923	+
GWHAAZE00000004	CDS	5050187	5050272	+
GWHAAZE00000004	CDS	5050369	5050491	+
GWHAAZE00000004	CDS	5050667	5050736	+
GWHAAZE00000004	CDS	5050817	5050908	+
GWHAAZE00000004	CDS	5051089	5051163	+

Transcript Sequence
>GWHTAAZE014075 ATGGCTTCATCATCTCCTTCAACTCCAACTCCATCTGACGGTAGTATTAAAGAAGAAAAGCTCACTGCACCATTCGGTTCTTGGAAGTCCCCCATCACCTCTGACGTCGTCTCCGGCGCCGCGAAGAGCTTGGGCGGCTCAGCTGTCGACTCTCACGGCCGCCTCTTCTGGCTTGAATCCCGTCCCACTGAATCCGGGCGATCGGTTCTTGTCAAGGAAGGGGAGGGACCTGGAGCTGAACCTACTGATATCACACCCAAAGAGTTTGCGGTGCGGACAGTTGCTCAAGAATACGGTGGTGGTGCTTTCACCATTTCCGGGGACACCGTAATCTTTTCGAATTACAAGGATCAGAGACTGTATAAGCAGTCAATTGAATCCGAAGGTCAACCTCTAGATTCTACCCCTGTGCCACTTACTCCGGATTATGGCGGACCTCTAGTGAGCTATGCAGATGGAGTGTTTGATAAACGCTTTAACCGTTTTGTCACTGTAAGTGAAGATCGTCGTGAGAGTAGCTTGAGCCCAACCACAAGTATTGTATCCATTGACCTCGGCGATAACAATATCCATGAACCAAAAATATTAGTTGGTGGCAATGACTTCTATGCATTCCCCCGCATGGACCCGAAAGGCGAGAGGATAGCATGGATTGAATGGGGCCACCCTAACATGCCATGGGATAGATCAGAACTTTGGGTTGGTTATATGTCTGACAATGGAGATGTTTGCAAATGCATCTGTGTTGCCGGTGGTGATCCTGCGGTTATAGAATCTCCAACTGAACCAAAGTGGTCCTCTGAAGGAGAATTATATTTCATCACGGATAGGAAAAGTGGGTTTTGGAATCTTCATAAATGGATTGAATCGGATAATCAAGTTCTGCCAGTTTACTCACTGAATGCTGAATTTGCAAGGCCATTATGGATTTTTGGCATGAATTCCTATGAATTTATTAACAGTCAGGATAAAGGAAACTTAATTGCTTGCAGTTATAGGCAGAACGGAAGGTCACATGTTGGAATTGTGGATGACACCCAGGGCACATTATCCATACTCGATACTCCTTTCACAGATATAAATAATATTGCTTCAGGGATTCATTGCTTATACGTTGAGGGCGCATCTGCAGTTCATCCATTGTCAATAGCCAAGGTGACTTTAGATGATCAGAAATCAAAAACAGTTGATTTCAAGATTATATGGTCTTCTTCGCCTAGTAGTTCCAAGTACAAATCGTACTTTAGCTCTCCGGAATTAATAGAATTTCCAACAGAAGTTCCTGGCCAGAATGCCTATGCATACTTTTATCCACCAACCAACCCCATTTATCAAGCTACTCAGGAAGAAAAACCTCCATTGTTATTGAAGAGCCATGGAGGGCCTACAGCTGAGACACGTGGTATCTTAAATCTCAGCGTCCAGTATTGGACCAGTCGAGGCTGGGCATTTGTCGATGTTAATTATGGTGGAAGTACTGGTTATGGCAGAGAATATCGAGAAAGGCTTTTGGCACAGTGGGGCATTGTTGATGTTAATGACTGTTGCAGTTGTGCCAAATTTTTGGTGGACAGTGGGAAGGCAGACGAGGAACGACTGTGCATTACTGGGGGATCTGCTGGTGGGTACACAACATTGGCTGCACTTGCTTTCAGAGATACATTCAAGGCTGGAGCTTCTTTGTATGGTGTAGCTGACTTAAAATTGCTGAGAGAAGAAACTCACAAATTTGAATCTCACTATATAGATAATCTTGTTGGTGGTGAAAAGGATTATTTTGAGAGGTCACCTATCAATTTTGTTGATAAATTTTCTTGCCCCATAATCCTCTTCCAAGGACTGGAAGACAAGATAGAGAAATTGGGATATCTGGGATTGGGATTTTATTATGACCAGAAAATCCAGTATCATGTAGAAGATATGTGA

Network for GWHGAAZE014061

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0047

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00326.22	Peptidase_S9	473	617	7.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008236	molecular_function	serine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.189
	SRR3591706	second leaf	20.492
	SRR3591707	mature leaf	25.307
	SRR3591708	Shoot apex	27.709
	SRR3591709	Stem	31.702
	SRR3591710	White floral bud	25.021
	SRR3591711	White flower	29.449
	SRR3591712	Green floral bud	36.473
	SRR3591713	Yellow flower	25.537
SRP173429	SRR8316895	Juvenile bud stage	32.068
	SRR8316896	Juvenile bud stage	42.194
	SRR8316897	Juvenile bud stage	22.574
	SRR8316894	Third green stage	18.167
	SRR8316900	Third green stage	54.481
	SRR8316901	Third green stage	48.891
	SRR8316898	Complete white stage	17.448
	SRR8316899	Complete white stage	69.605
	SRR8316903	Complete white stage	24.440
	SRR8316902	Silver flowering stage	18.156
	SRR8316904	Silver flowering stage	23.737
	SRR8316905	Silver flowering stage	12.523
	SRR8316906	Gold flowering stage	51.332
	SRR8316907	Gold flowering stage	45.347
	SRR8316908	Gold flowering stage	46.868
SRP132670	SRR6706286	Control	51.388
	SRR6706287	Light intensity 50%	51.891
	SRR6706288	Light intensity 20%	56.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.884
	CNS0095593	Slightly white alabastrum(diploid) 2	19.542
	CNS0095594	Slightly white alabastrum(diploid) 3	18.071
	CNS0095595	Whole white alabastrum(diploid) 2	20.499
	CNS0095596	Whole white alabastrum(diploid) 3	19.316
	CNS0095597	Whole white alabastrum(diploid) 4	17.407
	CNS0095598	Silvery flower (diploied) 1	36.221
	CNS0095599	Silvery flower (diploied) 2	36.261
	CNS0095600	Silvery flower (diploied) 3	41.737
	CNS0095601	Golden flower (diploid) 1	33.178
	CNS0095602	Golden flower (diploid) 2	44.959
	CNS0095603	Golden flower (diploid) 3	42.454
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.212
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.638
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.984
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.856
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.618
	CNS0095610	Silvery flower (tetraploid) 1	37.822
	CNS0095611	Silvery flower (tetraploid) 2	45.934
	CNS0095612	Silvery flower (tetraploid) 3	35.492
	CNS0095613	Golden flower (tetraploid) 1	14.875
	CNS0095614	Golden flower (tetraploid) 2	33.134
	CNS0095615	Golden flower (tetraploid) 3	11.706
CRA001975	CRR073297	Stem 1	46.106
	CRR073298	Stem 2	45.146
	CRR073299	Stem 3	47.931
	CRR073300	Leaf 1	51.919
	CRR073301	Leaf 2	47.866
	CRR073302	Leaf 3	53.440
	CRR073303	Juvenile bud 1	49.414
	CRR073304	Juvenile bud 2	36.880
	CRR073305	Juvenile bud 3	55.038
	CRR073306	Third green 1	15.317
	CRR073307	Third green 2	12.263
	CRR073308	Third green 3	14.654
	CRR073309	Second white 1	23.215
	CRR073310	Second white 2	16.271
	CRR073311	Second white 3	14.525
	CRR073312	Silver flowering 1	8.615
	CRR073313	Silver flowering 2	9.536
	CRR073314	Silver flowering 3	8.503
	CRR073315	Gold flowering 1	45.997
	CRR073316	Gold flowering 2	84.582
	CRR073317	Gold flowering 3	57.949
	CRR073318	Tawny withering 1	32.799
	CRR073319	Tawny withering 2	20.475
	CRR073320	Tawny withering 3	28.482