Gene detail

Detail information of GWHGAAZE014071

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664591.1	7.3524E-105	PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Vitis vinifera]
Swissprot	tr\|O48721\|HEM4_ARATH	7E-86	Uroporphyrinogen-III synthase, chloroplastic (Precursor)
trEMBL	tr\|E0CPB0\|E0CPB0_VITVI	2E-104	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19567.3}
TAIR10	AT2G26540.1	3E-62	uroporphyrinogen-III synthase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	5179207	5181758	-
GWHAAZE00000004	mRNA	5179207	5181758	-
GWHAAZE00000004	exon	5181661	5181758	-
GWHAAZE00000004	exon	5181294	5181412	-
GWHAAZE00000004	exon	5181107	5181202	-
GWHAAZE00000004	exon	5180147	5180202	-
GWHAAZE00000004	exon	5179548	5179633	-
GWHAAZE00000004	exon	5179207	5179454	-
GWHAAZE00000004	CDS	5181661	5181758	-
GWHAAZE00000004	CDS	5181294	5181412	-
GWHAAZE00000004	CDS	5181107	5181202	-
GWHAAZE00000004	CDS	5180147	5180202	-
GWHAAZE00000004	CDS	5179548	5179633	-
GWHAAZE00000004	CDS	5179316	5179454	-
GWHAAZE00000004	three_prime_UTR	5179207	5179315	-

Transcript Sequence
>GWHTAAZE014085 ATGCCCTTCCTCCCTTATCTTGTGGCTGCAGAGACTACCTTTGACTGGATCATTATAACATCTCCTGAAGCGGGTTTGGTTTTCCTTGAAGCTTGGAAAGCTGCTGGAACCCCAAATGTAAAGGTTGCTGTGGTTGGAGGCGGTACAGCAAGCATATTCGAGGAAGTTTCTGATTCGTCAAAGCAGTTTCTTGAGGTTGCTTTCACGCCATCAAAAGCAACTGGTAAGGTTTTGGCTTCAGAGCTTCCAAAGCATGGGGATAGAAAATGCAGAGTCCTATATCCTGCTTCTGCAAAAGCAAGCAATGAAATTGAGGAAGGCCTTTCTAAGCGGGGATTTGAGGTCACAAGACTGAACACATACACAACGGTATCTATTAATCATGTGGATAAAATGGTTTTTGAGCAGGCACTAGCTGCTCCAGTTGTTGCCGTAGCATCGCCTTCTGCACTTCGTGCGTGGGTTAATCTTATCCCAGAATCACCAAGGTGGGATAACTCTGTTGCATGCATTGGAGAGACGACTGCTTTGGCTGCAAAGAGATTGGGTTTGAGAAATGTATACTATCCAAGAAACCCGGGGCTCGAAGGGTAATCTTCGCTCATCTAACTTATTTTGTAAAATTCACTTTCAAGGATTCTAGTTTTAGATGCTAAACGCTTAATTTTGTGCTTTTAAGTTTTAACTGAAGCATAACACTTAT

Network for GWHGAAZE014071

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02602.16	HEM4	12	197	4.30E-38

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01719	hemD, UROS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Porphyrin and chlorophyll metabolism	map00860

Gene Ontology

GO term	Ontology	Name
GO:0033014	biological_process	tetrapyrrole biosynthetic process
GO:0004852	molecular_function	uroporphyrinogen-III synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	50.438
	SRR3591706	second leaf	109.601
	SRR3591707	mature leaf	83.615
	SRR3591708	Shoot apex	74.857
	SRR3591709	Stem	48.486
	SRR3591710	White floral bud	13.759
	SRR3591711	White flower	41.811
	SRR3591712	Green floral bud	7.601
	SRR3591713	Yellow flower	46.273
SRP173429	SRR8316895	Juvenile bud stage	22.740
	SRR8316896	Juvenile bud stage	24.844
	SRR8316897	Juvenile bud stage	12.265
	SRR8316894	Third green stage	7.964
	SRR8316900	Third green stage	10.348
	SRR8316901	Third green stage	11.905
	SRR8316898	Complete white stage	10.723
	SRR8316899	Complete white stage	22.731
	SRR8316903	Complete white stage	16.695
	SRR8316902	Silver flowering stage	21.508
	SRR8316904	Silver flowering stage	24.818
	SRR8316905	Silver flowering stage	14.778
	SRR8316906	Gold flowering stage	35.410
	SRR8316907	Gold flowering stage	30.393
	SRR8316908	Gold flowering stage	29.408
SRP132670	SRR6706286	Control	24.599
	SRR6706287	Light intensity 50%	22.935
	SRR6706288	Light intensity 20%	24.431
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.116
	CNS0095593	Slightly white alabastrum(diploid) 2	11.417
	CNS0095594	Slightly white alabastrum(diploid) 3	13.588
	CNS0095595	Whole white alabastrum(diploid) 2	11.528
	CNS0095596	Whole white alabastrum(diploid) 3	9.692
	CNS0095597	Whole white alabastrum(diploid) 4	11.510
	CNS0095598	Silvery flower (diploied) 1	44.039
	CNS0095599	Silvery flower (diploied) 2	26.678
	CNS0095600	Silvery flower (diploied) 3	38.156
	CNS0095601	Golden flower (diploid) 1	41.772
	CNS0095602	Golden flower (diploid) 2	51.384
	CNS0095603	Golden flower (diploid) 3	49.955
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.179
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.738
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.174
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.704
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.309
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.655
	CNS0095610	Silvery flower (tetraploid) 1	49.710
	CNS0095611	Silvery flower (tetraploid) 2	47.796
	CNS0095612	Silvery flower (tetraploid) 3	37.539
	CNS0095613	Golden flower (tetraploid) 1	28.592
	CNS0095614	Golden flower (tetraploid) 2	35.845
	CNS0095615	Golden flower (tetraploid) 3	26.425
CRA001975	CRR073297	Stem 1	40.536
	CRR073298	Stem 2	31.087
	CRR073299	Stem 3	36.591
	CRR073300	Leaf 1	21.698
	CRR073301	Leaf 2	26.690
	CRR073302	Leaf 3	16.180
	CRR073303	Juvenile bud 1	17.393
	CRR073304	Juvenile bud 2	10.168
	CRR073305	Juvenile bud 3	21.421
	CRR073306	Third green 1	18.748
	CRR073307	Third green 2	18.462
	CRR073308	Third green 3	18.493
	CRR073309	Second white 1	29.733
	CRR073310	Second white 2	21.653
	CRR073311	Second white 3	19.380
	CRR073312	Silver flowering 1	22.728
	CRR073313	Silver flowering 2	27.680
	CRR073314	Silver flowering 3	23.253
	CRR073315	Gold flowering 1	64.571
	CRR073316	Gold flowering 2	97.199
	CRR073317	Gold flowering 3	66.628
	CRR073318	Tawny withering 1	38.654
	CRR073319	Tawny withering 2	38.153
	CRR073320	Tawny withering 3	33.681