Gene detail

Detail information of GWHGAAZE014091

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006354900.1	4.37526E-87	PREDICTED: B3 domain-containing protein At3g19184-like [Solanum tuberosum]
Swissprot	tr\|Q9FMZ4\|Y5270_ARATH	6E-65	B3 domain-containing protein At5g42700
trEMBL	tr\|M1ADZ4\|M1ADZ4_SOLTU	2E-87	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400020700}
TAIR10	AT5G42700.1	9E-53	AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	5419967	5421735	+
GWHAAZE00000004	mRNA	5419967	5421735	+
GWHAAZE00000004	exon	5419967	5420101	+
GWHAAZE00000004	exon	5420209	5420313	+
GWHAAZE00000004	exon	5420632	5420739	+
GWHAAZE00000004	exon	5421333	5421539	+
GWHAAZE00000004	exon	5421667	5421735	+
GWHAAZE00000004	CDS	5419967	5420101	+
GWHAAZE00000004	CDS	5420209	5420313	+
GWHAAZE00000004	CDS	5420632	5420739	+
GWHAAZE00000004	CDS	5421333	5421539	+
GWHAAZE00000004	CDS	5421667	5421735	+

Transcript Sequence
>GWHTAAZE014105 ATGGTGGTGGCTAAGGTAACATACGAAGAACAAAGGAAGCAGAGGTTGGAAGAGAACAAGAAGAGGATGGAAGAGCTTCATCTTCCCTTGCTCGCTCAAGCTCTCAAGAACTCCTCCGCTCCCAAAACCCCTCCGCAAAAGATGAAGCGGTCAACACCTCGCATTGTTAAGAAAGAAATGGTGGAGGTTAGGAGGTCTAATCGTATCGCTAACAATCCTGCCCCTGAGTACAGAGAAATAAGCAATGCTATAATGAAAGCAGAAGAACTGGAAGTTGGGCTAGGATCTGAGTTTCCTACATTTGTCAAGCCCATGCTACAATCACATGTCACTGGTGGCTTTTGGCTGGGCCTTCCAAGCTATTTCTGCAGAAGGAATCTTCCAAAAAGGGATGAAACTTTTACATTGATAGATGAGGAGGGAGAAGAGTATCCAACAGTATACTTGGCTGGGAAAGCAGGACTTAGTGGTGGATGGAGAGGATTTTCAATTGAACACGGGTTGGTTGATGGGGACGCACTTGTGTTCCAGTTAATCCGGCCAACCGCGTTTAAGGTTTACATTATTAGAGTGAATGATTCTGAAGAGGCAGAGGGTGACAAAATTGAAACCTTAGATGCTTAG

Network for GWHGAAZE014091

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	101	190	7.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.521
	SRR3591706	second leaf	0.436
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	25.817
	SRR3591709	Stem	5.401
	SRR3591710	White floral bud	0.308
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.707
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	2.072
	SRR8316896	Juvenile bud stage	1.388
	SRR8316897	Juvenile bud stage	1.231
	SRR8316894	Third green stage	0.412
	SRR8316900	Third green stage	0.263
	SRR8316901	Third green stage	0.171
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.046
	SRR8316903	Complete white stage	0.039
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.011
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.069
SRP132670	SRR6706286	Control	0.551
	SRR6706287	Light intensity 50%	0.423
	SRR6706288	Light intensity 20%	0.428
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.425
	CNS0095593	Slightly white alabastrum(diploid) 2	1.684
	CNS0095594	Slightly white alabastrum(diploid) 3	0.569
	CNS0095595	Whole white alabastrum(diploid) 2	0.539
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.396
	CNS0095598	Silvery flower (diploied) 1	1.697
	CNS0095599	Silvery flower (diploied) 2	1.753
	CNS0095600	Silvery flower (diploied) 3	0.261
	CNS0095601	Golden flower (diploid) 1	0.304
	CNS0095602	Golden flower (diploid) 2	0.713
	CNS0095603	Golden flower (diploid) 3	0.339
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.635
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.966
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.397
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.018
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.173
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.179
	CNS0095612	Silvery flower (tetraploid) 3	0.332
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.104
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.042
	CRR073298	Stem 2	2.953
	CRR073299	Stem 3	2.886
	CRR073300	Leaf 1	0.665
	CRR073301	Leaf 2	0.721
	CRR073302	Leaf 3	0.702
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.015
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.187
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	3.927
	CRR073319	Tawny withering 2	1.038
	CRR073320	Tawny withering 3	3.436