Detail information of GWHGAAZE014102


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABS32230.16.9641E-83transducin family protein [Carica papaya]
Swissprottr|P42653|1433A_VICFA2E-1714-3-3-like protein A
trEMBLtr|A7L4A5|A7L4A5_CARPA3E-83Transducin family protein {ECO:0000313|EMBL:ABS32230.1}
TAIR10AT1G71840.11E-63transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene56472925659592-
GWHAAZE00000004mRNA56472925659592-
GWHAAZE00000004exon56592875659592-
GWHAAZE00000004exon56589895659111-
GWHAAZE00000004exon56529585653186-
GWHAAZE00000004exon56512295651348-
GWHAAZE00000004exon56509145651058-
GWHAAZE00000004exon56506885650827-
GWHAAZE00000004exon56495835649698-
GWHAAZE00000004exon56486595648701-
GWHAAZE00000004exon56477435647833-
GWHAAZE00000004exon56472925647337-
GWHAAZE00000004CDS56592875659592-
GWHAAZE00000004CDS56589895659111-
GWHAAZE00000004CDS56529585653186-
GWHAAZE00000004CDS56512295651348-
GWHAAZE00000004CDS56509145651058-
GWHAAZE00000004CDS56506885650827-
GWHAAZE00000004CDS56495835649698-
GWHAAZE00000004CDS56486595648701-
GWHAAZE00000004CDS56477435647833-
GWHAAZE00000004CDS56472925647337-
Transcript Sequence

Network for GWHGAAZE014102

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0227


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00244.212014/3/3361775.80E-19
PF00400.33WD402572901.50E-07
PF00400.33WD403633860.15
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding
GO:0019904molecular_functionprotein domain specific binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.839
SRR3591706second leaf10.195
SRR3591707mature leaf10.264
SRR3591708Shoot apex12.519
SRR3591709Stem12.738
SRR3591710White floral bud11.971
SRR3591711White flower14.678
SRR3591712Green floral bud14.512
SRR3591713Yellow flower8.611
SRP173429 SRR8316895Juvenile bud stage 24.457
SRR8316896Juvenile bud stage 37.779
SRR8316897Juvenile bud stage 13.057
SRR8316894Third green stage 14.969
SRR8316900Third green stage 34.786
SRR8316901Third green stage 35.099
SRR8316898Complete white stage 9.548
SRR8316899Complete white stage 34.931
SRR8316903Complete white stage 19.393
SRR8316902Silver flowering stage9.502
SRR8316904Silver flowering stage15.347
SRR8316905Silver flowering stage6.511
SRR8316906Gold flowering stage 20.809
SRR8316907Gold flowering stage 19.225
SRR8316908Gold flowering stage 16.271
SRP132670SRR6706286Control38.664
SRR6706287Light intensity 50%44.813
SRR6706288Light intensity 20%44.346
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.318
CNS0095593Slightly white alabastrum(diploid) 224.646
CNS0095594Slightly white alabastrum(diploid) 328.133
CNS0095595Whole white alabastrum(diploid) 223.719
CNS0095596Whole white alabastrum(diploid) 322.565
CNS0095597Whole white alabastrum(diploid) 423.310
CNS0095598Silvery flower (diploied) 123.300
CNS0095599Silvery flower (diploied) 215.308
CNS0095600Silvery flower (diploied) 330.173
CNS0095601Golden flower (diploid) 119.687
CNS0095602Golden flower (diploid) 228.018
CNS0095603Golden flower (diploid) 327.839
CNS0095604Slightly white alabastrum(tetraploid) 123.284
CNS0095605Slightly white alabastrum(tetraploid) 226.641
CNS0095606Slightly white alabastrum(tetraploid) 335.616
CNS0095607Whole white alabastrum(tetraploid) 117.136
CNS0095608Whole white alabastrum(tetraploid) 214.577
CNS0095609Whole white alabastrum(tetraploid) 324.960
CNS0095610Silvery flower (tetraploid) 122.271
CNS0095611Silvery flower (tetraploid) 224.171
CNS0095612Silvery flower (tetraploid) 319.050
CNS0095613Golden flower (tetraploid) 113.433
CNS0095614Golden flower (tetraploid) 218.811
CNS0095615Golden flower (tetraploid) 323.900
CRA001975CRR073297Stem 145.043
CRR073298Stem 240.518
CRR073299Stem 325.199
CRR073300Leaf 142.192
CRR073301Leaf 241.051
CRR073302Leaf 326.520
CRR073303Juvenile bud 125.373
CRR073304Juvenile bud 225.034
CRR073305Juvenile bud 325.172
CRR073306Third green 112.369
CRR073307Third green 214.920
CRR073308Third green 313.956
CRR073309Second white 112.006
CRR073310Second white 29.115
CRR073311Second white 37.133
CRR073312Silver flowering 113.288
CRR073313Silver flowering 216.817
CRR073314Silver flowering 313.296
CRR073315Gold flowering 110.551
CRR073316Gold flowering 212.447
CRR073317Gold flowering 311.152
CRR073318Tawny withering 119.599
CRR073319Tawny withering 217.562
CRR073320Tawny withering 322.093