Gene detail

Detail information of GWHGAAZE014110

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHA43415.1	8.4082E-174	AREB-like protein [Solanum nigrum]
Swissprot	tr\|Q9M7Q4\|AI5L5_ARATH	1E-116	ABSCISIC ACID-INSENSITIVE 5-like protein 5
trEMBL	tr\|V5L0A1\|V5L0A1_SOLNI	3E-174	AREB-like protein {ECO:0000313\|EMBL:AHA43415.1}
TAIR10	AT1G45249.1	6E-81	abscisic acid responsive elements-binding factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	5939561	5943872	+
GWHAAZE00000004	mRNA	5939561	5943872	+
GWHAAZE00000004	exon	5939561	5940820	+
GWHAAZE00000004	exon	5943053	5943124	+
GWHAAZE00000004	exon	5943217	5943246	+
GWHAAZE00000004	exon	5943722	5943872	+
GWHAAZE00000004	CDS	5939561	5940820	+
GWHAAZE00000004	CDS	5943053	5943124	+
GWHAAZE00000004	CDS	5943217	5943246	+
GWHAAZE00000004	CDS	5943722	5943796	+
GWHAAZE00000004	three_prime_UTR	5943797	5943872	+

Transcript Sequence
>GWHTAAZE014124 ATGAACTTCAAAAGCTATGGAAATGAGCCACCAGGGGAAGCTGGTAGTGGTAGTGGCACTGGACGGTTGGAGGTTAACTTTCCATTGGCGCGGCAAACCTCCATCTATTCACTAACCTTTGACGAGCTTCAGAGCACAATGGGTGGCCCTGGTAAAGATTTTGGATCCATGAATATGGATGAATTGTTAAAGAGTATTTGGAGTGCTGAGGAGATTCAAACCATGGGGTCTACTACTAGTGTACAAGAAGGTGGTGTCCCTGGAGGGTACTTGCAAAGACAAGGCTCATTAACTTTGCCTAGGACTCTAAGCACAAAGACTGTTGATGAAGTTTGGAAAAATATATCAAAAGATTACGGCGAAGTTAAGGATGGGAATAGTTTTGGGGGATCAAATTTGCCACAGACGCAGAGGCAGCAGACTTTGGGAGAGATCACTCTTGAGGAATTCTTGGTCAAAGCTGGGGTTGTTATGGAAGATAATCAATATAACGGAAAAACTAGTAATACTACTGGATTATTTGGTAATAATCCTGCTTATGGAACTGGGTTTCAGCAAACGGGTAGGAATGTGGGACTGATGGGAAATAGGATCCCTGAGAGTACTAATCAAATTACTTTTCAGTCTGCTGATCTACCACTCAATGTCAACAGGGTTAGATCGACCCAGCAGCAGCAGCAGCAGCAACTTTTTCCTAAGCCAACCAGTCTAGCTTATGCGCCTCCCATGGCTATTCCAAGCAGTGGGCAGTTGGGTAGCCCGATCCCTGAGAGTACTAATCAAATTACTTTTCAGTCTGCTGATCTACCACTCAATGTCAACGGGGTTAGATCGACCCAGCAGCAGCCACAGCAGCAGCAACTTTTTCCTAAGCCAACCAGTCTAGCTTATGCGCCTCCCATGGCTATTCCAAGCAGTGGGCAGTTGGGTAGCCCGGGAATTAGAGGTGGTGTTGCAAGAATCCCAGATCAAGCGTTGAATTGTAACTTGGTTAATAATTCAGGGCTACAAGGTGGAGGGATTGGGATGGTAGGTTTAGGAGCTGGGGCTGCTACTGTTGCAACGGGATCTCCAGCAGTTTCTTCAGATGGGCTTGGAAAGAGTAACGGAGATACATCTTCCGTGTCACCTGTTCCTTATGCGTTTAATGGAGGTTTACGGGGAAGGAAAAGCAGCACAGTGGAGAAAGTTGTCGAGAGAAGGCAGAGAAGAATGATAAAGAATAGGGAGTCAGCAGCAAGATCTAGAGCTCGTAAACAGGCCTATACTATGGAATTGGAAGCGGAAGTTGCCAAACTCAAAGAGGAAAACGAAGAATTGCGTAAGAAGCAGGCAGAAATTATGGAGATGCAGAAGATTCAGGTTATGGAGATGATGAACTTGCAGCGGGGAGTTAAAAGACGATGCCTGAGAAGAACACAGACTGGTCCATGGTGAAGAAGAAGATGTAATATTTTGGTGTTAAAATTTAAACACCTGGTAGGTCGGTGTACATATTTAAGAGAGGAGCCTT

Network for GWHGAAZE014110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.22	bZIP_1	400	450	7.40E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K14432	ABF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.573
	SRR3591706	second leaf	24.146
	SRR3591707	mature leaf	32.723
	SRR3591708	Shoot apex	29.724
	SRR3591709	Stem	28.871
	SRR3591710	White floral bud	29.267
	SRR3591711	White flower	42.359
	SRR3591712	Green floral bud	18.517
	SRR3591713	Yellow flower	41.757
SRP173429	SRR8316895	Juvenile bud stage	33.635
	SRR8316896	Juvenile bud stage	50.203
	SRR8316897	Juvenile bud stage	26.854
	SRR8316894	Third green stage	12.410
	SRR8316900	Third green stage	36.501
	SRR8316901	Third green stage	44.368
	SRR8316898	Complete white stage	17.618
	SRR8316899	Complete white stage	39.980
	SRR8316903	Complete white stage	31.279
	SRR8316902	Silver flowering stage	23.539
	SRR8316904	Silver flowering stage	31.629
	SRR8316905	Silver flowering stage	19.251
	SRR8316906	Gold flowering stage	52.723
	SRR8316907	Gold flowering stage	41.743
	SRR8316908	Gold flowering stage	52.420
SRP132670	SRR6706286	Control	34.750
	SRR6706287	Light intensity 50%	33.074
	SRR6706288	Light intensity 20%	33.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.774
	CNS0095593	Slightly white alabastrum(diploid) 2	27.003
	CNS0095594	Slightly white alabastrum(diploid) 3	26.149
	CNS0095595	Whole white alabastrum(diploid) 2	28.542
	CNS0095596	Whole white alabastrum(diploid) 3	17.251
	CNS0095597	Whole white alabastrum(diploid) 4	19.790
	CNS0095598	Silvery flower (diploied) 1	38.501
	CNS0095599	Silvery flower (diploied) 2	52.261
	CNS0095600	Silvery flower (diploied) 3	55.494
	CNS0095601	Golden flower (diploid) 1	43.396
	CNS0095602	Golden flower (diploid) 2	49.250
	CNS0095603	Golden flower (diploid) 3	47.189
	CNS0095604	Slightly white alabastrum(tetraploid) 1	32.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.398
	CNS0095606	Slightly white alabastrum(tetraploid) 3	62.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.301
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	43.659
	CNS0095610	Silvery flower (tetraploid) 1	80.808
	CNS0095611	Silvery flower (tetraploid) 2	64.970
	CNS0095612	Silvery flower (tetraploid) 3	25.274
	CNS0095613	Golden flower (tetraploid) 1	49.041
	CNS0095614	Golden flower (tetraploid) 2	68.820
	CNS0095615	Golden flower (tetraploid) 3	35.778
CRA001975	CRR073297	Stem 1	20.423
	CRR073298	Stem 2	19.020
	CRR073299	Stem 3	10.642
	CRR073300	Leaf 1	32.275
	CRR073301	Leaf 2	31.460
	CRR073302	Leaf 3	15.772
	CRR073303	Juvenile bud 1	19.853
	CRR073304	Juvenile bud 2	17.142
	CRR073305	Juvenile bud 3	18.069
	CRR073306	Third green 1	43.282
	CRR073307	Third green 2	25.189
	CRR073308	Third green 3	31.427
	CRR073309	Second white 1	23.969
	CRR073310	Second white 2	35.898
	CRR073311	Second white 3	27.288
	CRR073312	Silver flowering 1	17.891
	CRR073313	Silver flowering 2	16.448
	CRR073314	Silver flowering 3	17.970
	CRR073315	Gold flowering 1	5.913
	CRR073316	Gold flowering 2	8.673
	CRR073317	Gold flowering 3	2.620
	CRR073318	Tawny withering 1	8.334
	CRR073319	Tawny withering 2	8.111
	CRR073320	Tawny withering 3	8.607