Detail information of GWHGAAZE014111


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284804.10PREDICTED: THO complex subunit 5B-like isoform X1 [Vitis vinifera]
Swissprottr|F4K4J0|THO5B_ARATH0THO complex subunit 5B
trEMBLtr|F6H1D0|F6H1D0_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45839.1}
TAIR10AT5G42920.20THO complex, subunit 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene59483985953713-
GWHAAZE00000004mRNA59483985953713-
GWHAAZE00000004exon59483985948664-
GWHAAZE00000004exon59490735949207-
GWHAAZE00000004exon59492985949898-
GWHAAZE00000004exon59502235950479-
GWHAAZE00000004exon59505785950915-
GWHAAZE00000004exon59516355951971-
GWHAAZE00000004exon59521165952406-
GWHAAZE00000004exon59535105953713-
GWHAAZE00000004CDS59535105953713-
GWHAAZE00000004CDS59521165952406-
GWHAAZE00000004CDS59516355951971-
GWHAAZE00000004CDS59505785950915-
GWHAAZE00000004CDS59502235950479-
GWHAAZE00000004CDS59492985949898-
GWHAAZE00000004CDS59490735949207-
GWHAAZE00000004CDS59483985948664-
Transcript Sequence

Network for GWHGAAZE014111

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF09766.10FmiP_Thoc5654212.40E-107
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13174THOC5 RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.137
SRR3591706second leaf16.944
SRR3591707mature leaf15.320
SRR3591708Shoot apex24.525
SRR3591709Stem18.211
SRR3591710White floral bud21.034
SRR3591711White flower26.603
SRR3591712Green floral bud19.631
SRR3591713Yellow flower21.621
SRP173429 SRR8316895Juvenile bud stage 14.904
SRR8316896Juvenile bud stage 17.313
SRR8316897Juvenile bud stage 10.217
SRR8316894Third green stage 7.632
SRR8316900Third green stage 20.862
SRR8316901Third green stage 18.862
SRR8316898Complete white stage 9.158
SRR8316899Complete white stage 28.177
SRR8316903Complete white stage 14.901
SRR8316902Silver flowering stage10.155
SRR8316904Silver flowering stage14.742
SRR8316905Silver flowering stage5.958
SRR8316906Gold flowering stage 20.520
SRR8316907Gold flowering stage 20.433
SRR8316908Gold flowering stage 24.485
SRP132670SRR6706286Control20.478
SRR6706287Light intensity 50%20.016
SRR6706288Light intensity 20%21.579
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.986
CNS0095593Slightly white alabastrum(diploid) 210.519
CNS0095594Slightly white alabastrum(diploid) 39.699
CNS0095595Whole white alabastrum(diploid) 29.724
CNS0095596Whole white alabastrum(diploid) 38.588
CNS0095597Whole white alabastrum(diploid) 48.196
CNS0095598Silvery flower (diploied) 116.235
CNS0095599Silvery flower (diploied) 215.395
CNS0095600Silvery flower (diploied) 325.263
CNS0095601Golden flower (diploid) 114.116
CNS0095602Golden flower (diploid) 224.541
CNS0095603Golden flower (diploid) 323.692
CNS0095604Slightly white alabastrum(tetraploid) 113.687
CNS0095605Slightly white alabastrum(tetraploid) 211.511
CNS0095606Slightly white alabastrum(tetraploid) 325.152
CNS0095607Whole white alabastrum(tetraploid) 17.482
CNS0095608Whole white alabastrum(tetraploid) 25.787
CNS0095609Whole white alabastrum(tetraploid) 319.726
CNS0095610Silvery flower (tetraploid) 122.234
CNS0095611Silvery flower (tetraploid) 223.957
CNS0095612Silvery flower (tetraploid) 322.715
CNS0095613Golden flower (tetraploid) 113.576
CNS0095614Golden flower (tetraploid) 221.226
CNS0095615Golden flower (tetraploid) 325.482
CRA001975CRR073297Stem 122.780
CRR073298Stem 222.040
CRR073299Stem 320.572
CRR073300Leaf 122.277
CRR073301Leaf 220.485
CRR073302Leaf 316.748
CRR073303Juvenile bud 116.271
CRR073304Juvenile bud 213.050
CRR073305Juvenile bud 320.934
CRR073306Third green 16.239
CRR073307Third green 27.495
CRR073308Third green 37.418
CRR073309Second white 17.698
CRR073310Second white 210.803
CRR073311Second white 38.206
CRR073312Silver flowering 18.344
CRR073313Silver flowering 27.877
CRR073314Silver flowering 36.262
CRR073315Gold flowering 16.698
CRR073316Gold flowering 215.909
CRR073317Gold flowering 38.715
CRR073318Tawny withering 116.141
CRR073319Tawny withering 214.478
CRR073320Tawny withering 317.291