Detail information of GWHGAAZE014114


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01324.10unnamed protein product [Coffea canephora]
Swissprottr|Q9M3B4|RID3_ARATH2E-179Protein ROOT INITIATION DEFECTIVE 3
trEMBLtr|A0A068TZG6|A0A068TZG6_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313|EMBL:CDP01324.1}
TAIR10AT3G49180.17E-136Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene60151296021383-
GWHAAZE00000004mRNA60151296021383-
GWHAAZE00000004exon60211746021383-
GWHAAZE00000004exon60209096021022-
GWHAAZE00000004exon60205906020723-
GWHAAZE00000004exon60203516020498-
GWHAAZE00000004exon60193956019591-
GWHAAZE00000004exon60184636018590-
GWHAAZE00000004exon60178406018090-
GWHAAZE00000004exon60151296015290-
GWHAAZE00000004CDS60211746021383-
GWHAAZE00000004CDS60209096021022-
GWHAAZE00000004CDS60205906020723-
GWHAAZE00000004CDS60203516020498-
GWHAAZE00000004CDS60193956019591-
GWHAAZE00000004CDS60184636018590-
GWHAAZE00000004CDS60178406018090-
GWHAAZE00000004CDS60151296015290-
Transcript Sequence

Network for GWHGAAZE014114

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401131502.40E-06
PF00400.33WD401712050.12
PF00400.33WD402612969.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.339
SRR3591706second leaf7.599
SRR3591707mature leaf13.166
SRR3591708Shoot apex25.506
SRR3591709Stem22.278
SRR3591710White floral bud19.293
SRR3591711White flower45.717
SRR3591712Green floral bud31.210
SRR3591713Yellow flower37.533
SRP173429 SRR8316895Juvenile bud stage 24.496
SRR8316896Juvenile bud stage 40.873
SRR8316897Juvenile bud stage 18.089
SRR8316894Third green stage 14.395
SRR8316900Third green stage 48.227
SRR8316901Third green stage 38.633
SRR8316898Complete white stage 11.041
SRR8316899Complete white stage 46.106
SRR8316903Complete white stage 13.438
SRR8316902Silver flowering stage13.288
SRR8316904Silver flowering stage14.598
SRR8316905Silver flowering stage6.913
SRR8316906Gold flowering stage 29.826
SRR8316907Gold flowering stage 27.025
SRR8316908Gold flowering stage 35.691
SRP132670SRR6706286Control28.829
SRR6706287Light intensity 50%28.483
SRR6706288Light intensity 20%31.443
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.200
CNS0095593Slightly white alabastrum(diploid) 225.206
CNS0095594Slightly white alabastrum(diploid) 325.346
CNS0095595Whole white alabastrum(diploid) 223.624
CNS0095596Whole white alabastrum(diploid) 329.266
CNS0095597Whole white alabastrum(diploid) 426.714
CNS0095598Silvery flower (diploied) 123.020
CNS0095599Silvery flower (diploied) 216.440
CNS0095600Silvery flower (diploied) 331.189
CNS0095601Golden flower (diploid) 116.737
CNS0095602Golden flower (diploid) 227.020
CNS0095603Golden flower (diploid) 326.023
CNS0095604Slightly white alabastrum(tetraploid) 132.239
CNS0095605Slightly white alabastrum(tetraploid) 228.517
CNS0095606Slightly white alabastrum(tetraploid) 332.367
CNS0095607Whole white alabastrum(tetraploid) 120.201
CNS0095608Whole white alabastrum(tetraploid) 218.557
CNS0095609Whole white alabastrum(tetraploid) 332.077
CNS0095610Silvery flower (tetraploid) 132.464
CNS0095611Silvery flower (tetraploid) 233.067
CNS0095612Silvery flower (tetraploid) 326.035
CNS0095613Golden flower (tetraploid) 115.331
CNS0095614Golden flower (tetraploid) 225.936
CNS0095615Golden flower (tetraploid) 319.642
CRA001975CRR073297Stem 118.177
CRR073298Stem 218.435
CRR073299Stem 316.052
CRR073300Leaf 118.122
CRR073301Leaf 220.023
CRR073302Leaf 318.545
CRR073303Juvenile bud 120.797
CRR073304Juvenile bud 213.870
CRR073305Juvenile bud 318.423
CRR073306Third green 13.571
CRR073307Third green 23.708
CRR073308Third green 34.480
CRR073309Second white 19.720
CRR073310Second white 26.173
CRR073311Second white 34.998
CRR073312Silver flowering 14.074
CRR073313Silver flowering 24.987
CRR073314Silver flowering 34.890
CRR073315Gold flowering 112.112
CRR073316Gold flowering 214.404
CRR073317Gold flowering 310.224
CRR073318Tawny withering 112.937
CRR073319Tawny withering 211.770
CRR073320Tawny withering 310.709