Gene detail

Detail information of GWHGAAZE014117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN83345.1	0	hypothetical protein VITISV_042276 [Vitis vinifera]
Swissprot	tr\|Q7XTV7\|HIP1_ORYSJ	6E-78	Probable E3 ubiquitin-protein ligase HIP1
trEMBL	tr\|A5BKN3\|A5BKN3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN83345.1}
TAIR10	AT1G45180.1	8E-74	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6124106	6128746	-
GWHAAZE00000004	mRNA	6124106	6128746	-
GWHAAZE00000004	exon	6127070	6128746	-
GWHAAZE00000004	exon	6125843	6125896	-
GWHAAZE00000004	exon	6124893	6124998	-
GWHAAZE00000004	exon	6124647	6124768	-
GWHAAZE00000004	exon	6124106	6124522	-
GWHAAZE00000004	CDS	6127070	6128746	-
GWHAAZE00000004	CDS	6125843	6125896	-
GWHAAZE00000004	CDS	6124893	6124998	-
GWHAAZE00000004	CDS	6124647	6124768	-
GWHAAZE00000004	CDS	6124391	6124522	-
GWHAAZE00000004	three_prime_UTR	6124106	6124390	-

Transcript Sequence
>GWHTAAZE014131 ATGCAAGGGCGGAGGAGTGCTGTTGGTTCCTTGCCTGACACCTTAGGCTTTGATCAAGGATCTACGCCAAGTAATGCAGGTATAGATCAGCAAATTTGCTGGAATAATATGCAGAATTCTGCACAAAACCGCCTATCAGACTACATGTCACCAAGCAATACAAGCATTACATACCTGAATTCTGTGAGTGAAGAGGAGCAAAATTTAAGTGGATGGAATATAGGGGAACCCATTTCAACTAATACACAAAACCAGGTTAGTCATAATGAGCGGAGAACAGAATGTGGATGGTCATCTTCAATGAATGCTTGTGCTGAAGTCAGTCCAGTCTTGGAAGAACGACGATTTGAACCAGCCAATATTTTTTCATTAAACACTGGTAATGTGGACCTAAGTAGCAGTCAGATTCCGAATGGGCCTTTGTTTCCACCAACTTCAAGTTCTGATTCTATTCCACAGGATCTTAACATAAGTTCAGGATTTGTGGGTCCCCATAGTGCATACAAGTCTAGTTCATCTCAAAATATGTGGGTGCCATCTTCTAGTAGTTCTTCTGATCCATGTGGGGTGCCTTCTGGAAGTGGTGGATACCTGCTGGAGGAAAATGATGCCAGGCCAGGCTGTGGTTTAGAGGATAATCGCTTATCCTGTAAGCGAAAAGCTATTGAAGGAAATATTGGACAATCTTCAGGCAGTGGAAGTTCAAACTATTATCAGCGTGCAGAAGGTAGTGTATGGCATGGTGTTCCTGCTCGCCGTAATGCTAGCAGAAGCTTGTGTATATCAACCCCTTCTGAAAGCACACTTGGTGCTGGTCCATTGGAGCAGGTGAACCAAGGACTTGGACTGGGTGTTGGAGGAGTTTCTTCTGAAAGTCCCCTTCCTTTAAGTGCACCGGGAAGTGCAGAAAGCTCTCGTAGAAATTTCCGGTTGAGGATTAATGCTTCACATCAGCAAGAGTCTACACCCACTCATGTTGTTCCACATCAATCATCGAGACTGCTTCCCCTTAATAATTCTTTAAATTTGAGGTCACCCCCACCAGCAGACAATACAAGTCCCCATGACCAGTTTGTTACTGTGCGGCGAAACTTGCAATCTTCTAGATGGAATAGAAGTTCAATCTCAAGACCCGGCAGTTCAAATTCTGGAATATCTGGAGAGAGAAATGCTGCACCACTTGAGGAATCCACCACAAGAACCATGCCTAGAAATATTTCGGAACATCCTATGTTTGTACCTGTGTCCGGGATAAGAAATTCGGCTCAAAATCCAGATAATTGGGGCGTAAGTGGTGGTAACATAAGCCTTGGTGGCAATGTTGCTTCAGCTTCTCGAACTGGCTCGAGTTCAGGTGTCCATCCTTCACCTGCTGCTCCTAACTGGGTTCCTCATCGCAATCCTCCCCATTATCCGAGGAGACTGGCAGAATTTGTTCGTAGGTCTTTGTTGTCTTCTGGTTCTGAGCCTGGTGGAGTGCAGAGTAGTAATATTTCAGATACTTCTGCTTCCTCCTCGCAAGAGATGTCACTTTCATCTGGAGAACAGGGGCATCATCTGTCACACTCAAGGTCAGCGGTGCTGCTGGATAGACAACTTGATGCTGCTTTTGGAATTCCTTATTCTATGAGAAGTTTGGCTACTGCCAGTGAAGGAGGAAGAAGCAGGCTATCTGAGCAGATTCGCAACGTTTTGGATATCATGCGCAGGGGCGAGGGCTTGAGATTTGAGGATGTTATGATCCTTGATCAGTCTGTCTTCTTTGGGATGGCCGATATTCATGATCGGCATAGGGATATGCGGCTCGATGTTGATAACATGTCATATGAGGCAAGTGAGCGAATTGGAAATGTGAACACTGGGTTGAGTGAAGAAACAATTTTGAATCGGCTGAAGAGGAGAAAGTGTGTATCCACCACAACTGATCATCCGGAGGTAGAGCCCTGCTGCGTATGTCAGGAGGAATATAAGAGTGGAGAAGATCTTGGAATGTTGGAATGTGGGCATGATTTCCACATCGACTGCATCAAACAATGGCTGATGCAAAAGAATTTGTGCCCTATTTGTAAAACAACAGCCCTGGTCACCTAAGAGTACCAATTTTTCCTTTAAACTGCTTCATTTATTATGATTAGATTTAAAAAAATGTGTGGGGATCCGAAAACTTGTTATTCTGCTCATTGAATCCTCTGGGTGAATAATACCTTTTCCCTCCATGGCACAACTGCTGATTATTACTTCATTGAAGACCACATGCATTTTCTTTTAAATTTATTAGTGTCTCCGCATGGAGAGGATGCATTTGATTCTAGTAAGTTAAAAAGTAGAGCTAGTTTAAGTACCCATTTGTTTTAAGAATTTCATTCTTATTGCAAA

Network for GWHGAAZE014117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	649	690	3.90E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.568
	SRR3591706	second leaf	26.660
	SRR3591707	mature leaf	30.701
	SRR3591708	Shoot apex	28.459
	SRR3591709	Stem	46.051
	SRR3591710	White floral bud	53.748
	SRR3591711	White flower	56.951
	SRR3591712	Green floral bud	37.840
	SRR3591713	Yellow flower	44.386
SRP173429	SRR8316895	Juvenile bud stage	20.637
	SRR8316896	Juvenile bud stage	27.737
	SRR8316897	Juvenile bud stage	16.204
	SRR8316894	Third green stage	10.283
	SRR8316900	Third green stage	26.867
	SRR8316901	Third green stage	28.634
	SRR8316898	Complete white stage	17.164
	SRR8316899	Complete white stage	38.094
	SRR8316903	Complete white stage	25.987
	SRR8316902	Silver flowering stage	18.626
	SRR8316904	Silver flowering stage	20.862
	SRR8316905	Silver flowering stage	10.462
	SRR8316906	Gold flowering stage	33.287
	SRR8316907	Gold flowering stage	34.398
	SRR8316908	Gold flowering stage	39.690
SRP132670	SRR6706286	Control	25.474
	SRR6706287	Light intensity 50%	28.038
	SRR6706288	Light intensity 20%	27.842
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.615
	CNS0095593	Slightly white alabastrum(diploid) 2	26.524
	CNS0095594	Slightly white alabastrum(diploid) 3	24.768
	CNS0095595	Whole white alabastrum(diploid) 2	21.342
	CNS0095596	Whole white alabastrum(diploid) 3	20.913
	CNS0095597	Whole white alabastrum(diploid) 4	21.494
	CNS0095598	Silvery flower (diploied) 1	28.233
	CNS0095599	Silvery flower (diploied) 2	18.904
	CNS0095600	Silvery flower (diploied) 3	41.166
	CNS0095601	Golden flower (diploid) 1	20.458
	CNS0095602	Golden flower (diploid) 2	35.857
	CNS0095603	Golden flower (diploid) 3	33.974
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.351
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.763
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.522
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.195
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.512
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.278
	CNS0095610	Silvery flower (tetraploid) 1	46.891
	CNS0095611	Silvery flower (tetraploid) 2	37.377
	CNS0095612	Silvery flower (tetraploid) 3	70.016
	CNS0095613	Golden flower (tetraploid) 1	32.975
	CNS0095614	Golden flower (tetraploid) 2	40.513
	CNS0095615	Golden flower (tetraploid) 3	54.202
CRA001975	CRR073297	Stem 1	36.588
	CRR073298	Stem 2	31.917
	CRR073299	Stem 3	34.056
	CRR073300	Leaf 1	38.253
	CRR073301	Leaf 2	35.042
	CRR073302	Leaf 3	25.853
	CRR073303	Juvenile bud 1	26.556
	CRR073304	Juvenile bud 2	25.965
	CRR073305	Juvenile bud 3	34.304
	CRR073306	Third green 1	55.344
	CRR073307	Third green 2	40.500
	CRR073308	Third green 3	50.828
	CRR073309	Second white 1	69.062
	CRR073310	Second white 2	59.497
	CRR073311	Second white 3	63.722
	CRR073312	Silver flowering 1	65.911
	CRR073313	Silver flowering 2	67.761
	CRR073314	Silver flowering 3	59.650
	CRR073315	Gold flowering 1	24.541
	CRR073316	Gold flowering 2	30.942
	CRR073317	Gold flowering 3	25.045
	CRR073318	Tawny withering 1	31.447
	CRR073319	Tawny withering 2	45.165
	CRR073320	Tawny withering 3	31.252