Detail information of GWHGAAZE014123


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN61018.13.27843E-88hypothetical protein VITISV_001138 [Vitis vinifera]
Swissprottr|Q42551|SCE1_ARATH1E-82SUMO-conjugating enzyme SCE1
trEMBLtr|A5B6X4|A5B6X4_VITVI1E-88Putative uncharacterized protein {ECO:0000313|EMBL:CAN61018.1}
TAIR10AT3G57870.19E-66sumo conjugation enzyme 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene62590056266328-
GWHAAZE00000004mRNA62590056266328-
GWHAAZE00000004exon62590056260248-
GWHAAZE00000004exon62603326260445-
GWHAAZE00000004exon62606096260761-
GWHAAZE00000004exon62618186261901-
GWHAAZE00000004exon62661526266328-
GWHAAZE00000004CDS62661526266328-
GWHAAZE00000004CDS62618186261901-
GWHAAZE00000004CDS62606096260761-
GWHAAZE00000004CDS62603326260445-
GWHAAZE00000004CDS62601866260248-
GWHAAZE00000004three_prime_UTR62590056260185-
Transcript Sequence

Network for GWHGAAZE014123

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.27UQ_con721875.00E-40
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10577UBE2I, UBC9 RNA transport map03013
Ubiquitin mediated proteolysismap04120
NF-kappa B signaling pathwaymap04064

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.973
SRR3591706second leaf2.779
SRR3591707mature leaf1.972
SRR3591708Shoot apex8.069
SRR3591709Stem4.729
SRR3591710White floral bud13.907
SRR3591711White flower5.109
SRR3591712Green floral bud17.439
SRR3591713Yellow flower2.172
SRP173429 SRR8316895Juvenile bud stage 4.178
SRR8316896Juvenile bud stage 8.193
SRR8316897Juvenile bud stage 3.577
SRR8316894Third green stage 4.270
SRR8316900Third green stage 11.014
SRR8316901Third green stage 11.249
SRR8316898Complete white stage 2.399
SRR8316899Complete white stage 14.122
SRR8316903Complete white stage 4.934
SRR8316902Silver flowering stage0.979
SRR8316904Silver flowering stage1.285
SRR8316905Silver flowering stage0.645
SRR8316906Gold flowering stage 1.186
SRR8316907Gold flowering stage 1.033
SRR8316908Gold flowering stage 1.966
SRP132670SRR6706286Control8.090
SRR6706287Light intensity 50%9.385
SRR6706288Light intensity 20%9.248
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.675
CNS0095593Slightly white alabastrum(diploid) 215.399
CNS0095594Slightly white alabastrum(diploid) 310.465
CNS0095595Whole white alabastrum(diploid) 212.437
CNS0095596Whole white alabastrum(diploid) 313.299
CNS0095597Whole white alabastrum(diploid) 413.196
CNS0095598Silvery flower (diploied) 17.958
CNS0095599Silvery flower (diploied) 26.494
CNS0095600Silvery flower (diploied) 32.757
CNS0095601Golden flower (diploid) 16.051
CNS0095602Golden flower (diploid) 22.712
CNS0095603Golden flower (diploid) 32.631
CNS0095604Slightly white alabastrum(tetraploid) 115.383
CNS0095605Slightly white alabastrum(tetraploid) 216.367
CNS0095606Slightly white alabastrum(tetraploid) 320.525
CNS0095607Whole white alabastrum(tetraploid) 111.975
CNS0095608Whole white alabastrum(tetraploid) 213.722
CNS0095609Whole white alabastrum(tetraploid) 319.023
CNS0095610Silvery flower (tetraploid) 16.808
CNS0095611Silvery flower (tetraploid) 26.824
CNS0095612Silvery flower (tetraploid) 37.567
CNS0095613Golden flower (tetraploid) 14.705
CNS0095614Golden flower (tetraploid) 25.895
CNS0095615Golden flower (tetraploid) 31.561
CRA001975CRR073297Stem 110.260
CRR073298Stem 29.020
CRR073299Stem 34.931
CRR073300Leaf 117.388
CRR073301Leaf 219.316
CRR073302Leaf 38.654
CRR073303Juvenile bud 19.931
CRR073304Juvenile bud 26.629
CRR073305Juvenile bud 38.938
CRR073306Third green 11.926
CRR073307Third green 23.218
CRR073308Third green 32.672
CRR073309Second white 10.430
CRR073310Second white 21.309
CRR073311Second white 31.046
CRR073312Silver flowering 10.588
CRR073313Silver flowering 21.226
CRR073314Silver flowering 31.137
CRR073315Gold flowering 14.038
CRR073316Gold flowering 24.608
CRR073317Gold flowering 32.620
CRR073318Tawny withering 15.465
CRR073319Tawny withering 28.787
CRR073320Tawny withering 34.370