Gene detail

Detail information of GWHGAAZE014133

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011029349.1	0	PREDICTED: F-box protein At1g47056-like [Populus euphratica]
Swissprot	tr\|Q9S9X4\|FBL8_ARATH	0	Putative F-box/LRR-repeat protein 8
trEMBL	tr\|A0A068TZD6\|A0A068TZD6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP01289.1}
TAIR10	AT4G07400.1	2E-176	VIER F-box proteine 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6402283	6403887	-
GWHAAZE00000004	mRNA	6402283	6403887	-
GWHAAZE00000004	exon	6402283	6403887	-
GWHAAZE00000004	CDS	6402283	6403887	-

Transcript Sequence
>GWHTAAZE014147 ATGGGACAGTCAGCTTCGACTCCCGCCGGTCTCCAGATTCGCCGCGACGTTATTCACTCCCACCGATCGCAAACCGGATCCACGACTTCGGCGATCTATCCGATGCAAGACTCGATTTTTCAGGAAATCCTCGACGAGGAACTTTACGATTACATTTCCAACCTCCCGGACGAGTGTTTGGCTTGCATTTTCCAGTCCCTTGGATCCGGTGACCGGAAGCGATGCTCTCTGGTCTGCCGAAGGTGGCTACAGATTGAGGGACAAAGTCGGCACCGCCTCTCTTTAAACGCCCAATCGGATCTCTTATCGGTTGTGCCTTCTCTCTTCACTCGGTTCGATTCGGTAACGAAACTCGCTCTGAAATGTGACCGTAGATCTGCGAGTATAGGCGATGAAGCCCTAATCCTCATCTCCGAGAGGTGCCAGAAGTTAACTCGTCTCAAGCTTCGAGCATGCCGTCAATTAACAGACGCTGGAATGGCTGTTTTCGCGAAGAATTGCAAGGGTTTGAAGAAGCTTTCGTGTGGATCCTGCACTTTTGGGGCTAAAGGTATGAACGCTTTGCTTGATAATTGTTCGTCTCTAGAAGAGTTATCAGTGAAACGCCTCCGTGGCATCACCGATGGCACCGGAGCGGTGCCGATTGGGCCTGGCTTGGCTGCGGCTTCGCTCAAAAGTATTTGTTTGAAAGAGCTCTATAATGGTCAGTTTTTCGGGCCGCTAATTATTGGTTCAAAGAATTTGAGAACTCTAAAGCTGTTTAGATGCTCAGGCGACTGGGATAAGCTTCTAGAAGTTATTACTGATCGAGTGACCGGTTTAGTTGAGGTTCATCTGGAGAGGCTGCAGGTTAGCGATGCCGGTCTTTTAGCACTTTCTAATTGTTCATCACTTGAGATATTACACATTGTGAAGACACCTGAATGTACAAATGAGGGACTTAAGTCCATTGCTGAACACTGCAAACTTCTTAGGAAACTTCATATTGATGGATGGAAGACGAATAGGATAGGTGACTTAGGCCTTAGCGCAGTTGCAAAACATTGCCCTAACCTTCAAGAACTTGTTCTTATTGGCCTCAATCCTACGCGTGTTAGTTTAGAGAGGCTTGCTACAGAGTGTCAAAATTTAGAACGGTTGGCACTTTGTGGAAGTGACACTGTTGGGGATGCAGAGATTTCGTGTATAGCGGCAAAATGTGTCGCTTTGAAGAAGCTCTGTATCAAGAGCTGCCCTGTATCTGATCACGGAATGGAAGCGCTTGCTGGTGGTTGCCCTAATTTGGTGAAGGTAAAGATTAAGAAATGTAAAGCAGTGACTTTGGAGGGTGCTGTTTGGTTAAGGGCGAGTAGGGGATCATTGGCTGTCAACCTAGATACCAATGAACCTGAAAACCAGGAACCTAGTATTGGTGAAGGTCCACAAGAAGTTGTTATGGAGGTTCCACCTATGGCTTCTCGAACTGAGGGTCCTAATATTGCATCAAATAGTGCTGGTCGATCGACATCGTTCAAAACAAGGTTAGGTCTTGCTGCTGGGCGAAATCTAGTGGCTTGCACTTTTAGAAGATGGTCAAGCTTTGGTGGCAGTTCAAGAAATAATTAA

Network for GWHGAAZE014133

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	52	86	1.80E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.206
	SRR3591706	second leaf	14.165
	SRR3591707	mature leaf	20.678
	SRR3591708	Shoot apex	34.960
	SRR3591709	Stem	27.175
	SRR3591710	White floral bud	29.340
	SRR3591711	White flower	28.444
	SRR3591712	Green floral bud	25.554
	SRR3591713	Yellow flower	28.331
SRP173429	SRR8316895	Juvenile bud stage	8.901
	SRR8316896	Juvenile bud stage	13.371
	SRR8316897	Juvenile bud stage	6.780
	SRR8316894	Third green stage	5.693
	SRR8316900	Third green stage	17.606
	SRR8316901	Third green stage	16.738
	SRR8316898	Complete white stage	8.060
	SRR8316899	Complete white stage	25.669
	SRR8316903	Complete white stage	14.249
	SRR8316902	Silver flowering stage	7.555
	SRR8316904	Silver flowering stage	9.663
	SRR8316905	Silver flowering stage	5.250
	SRR8316906	Gold flowering stage	16.900
	SRR8316907	Gold flowering stage	15.093
	SRR8316908	Gold flowering stage	20.032
SRP132670	SRR6706286	Control	18.214
	SRR6706287	Light intensity 50%	19.516
	SRR6706288	Light intensity 20%	19.835
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.012
	CNS0095593	Slightly white alabastrum(diploid) 2	11.825
	CNS0095594	Slightly white alabastrum(diploid) 3	9.558
	CNS0095595	Whole white alabastrum(diploid) 2	14.800
	CNS0095596	Whole white alabastrum(diploid) 3	14.875
	CNS0095597	Whole white alabastrum(diploid) 4	19.291
	CNS0095598	Silvery flower (diploied) 1	18.447
	CNS0095599	Silvery flower (diploied) 2	15.638
	CNS0095600	Silvery flower (diploied) 3	22.523
	CNS0095601	Golden flower (diploid) 1	16.520
	CNS0095602	Golden flower (diploid) 2	32.447
	CNS0095603	Golden flower (diploid) 3	29.077
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.553
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.847
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.707
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.861
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.901
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.585
	CNS0095610	Silvery flower (tetraploid) 1	20.039
	CNS0095611	Silvery flower (tetraploid) 2	25.058
	CNS0095612	Silvery flower (tetraploid) 3	24.140
	CNS0095613	Golden flower (tetraploid) 1	12.484
	CNS0095614	Golden flower (tetraploid) 2	19.689
	CNS0095615	Golden flower (tetraploid) 3	32.719
CRA001975	CRR073297	Stem 1	32.991
	CRR073298	Stem 2	31.134
	CRR073299	Stem 3	38.744
	CRR073300	Leaf 1	31.091
	CRR073301	Leaf 2	33.312
	CRR073302	Leaf 3	38.126
	CRR073303	Juvenile bud 1	30.832
	CRR073304	Juvenile bud 2	26.406
	CRR073305	Juvenile bud 3	34.381
	CRR073306	Third green 1	19.986
	CRR073307	Third green 2	16.100
	CRR073308	Third green 3	16.116
	CRR073309	Second white 1	14.641
	CRR073310	Second white 2	11.990
	CRR073311	Second white 3	11.333
	CRR073312	Silver flowering 1	15.282
	CRR073313	Silver flowering 2	20.610
	CRR073314	Silver flowering 3	14.281
	CRR073315	Gold flowering 1	21.481
	CRR073316	Gold flowering 2	27.164
	CRR073317	Gold flowering 3	34.257
	CRR073318	Tawny withering 1	42.766
	CRR073319	Tawny withering 2	32.771
	CRR073320	Tawny withering 3	32.415