Gene detail

Detail information of GWHGAAZE014134

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAE80324.1	1.9187E-126	cyclin D3-1 [Camellia sinensis]
Swissprot	tr\|P42753\|CCD31_ARATH	2E-90	Cyclin-D3-1
trEMBL	tr\|Q2ABE7\|Q2ABE7_CAMSI	7E-127	Cyclin D3-1 {ECO:0000313\|EMBL:BAE80324.1}
TAIR10	AT4G34160.1	4E-71	CYCLIN D3;1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6426404	6427837	+
GWHAAZE00000004	mRNA	6426404	6427837	+
GWHAAZE00000004	exon	6426404	6426889	+
GWHAAZE00000004	exon	6427007	6427208	+
GWHAAZE00000004	exon	6427353	6427492	+
GWHAAZE00000004	exon	6427622	6427837	+
GWHAAZE00000004	CDS	6426404	6426889	+
GWHAAZE00000004	CDS	6427007	6427208	+
GWHAAZE00000004	CDS	6427353	6427492	+
GWHAAZE00000004	CDS	6427622	6427837	+

Transcript Sequence
>GWHTAAZE014148 ATGGCTCACCAACAACGAAAACAAAACCCTCCATTTCTCTTAGAAGATGATTATCTCTACTGTGAAGAGGAACACTGGGTAGGAGAAGAGACTAATAATTACTGTCACTATAATAACCCCAAACCTCTACTATTACTGGAACAAGACTTGTTTTGTGAAGGTGGAGAGTTGACCTGTCTGTTTTCTAAAGAAGAGCAACAACAAAACTCCTGTTTGATTAATAATTTTGCCATTAGTATTCCATTGTTGTCCAGGTCTCGCCGTGAGGCGGTGGATTGGATACTGAATGTAGTGGACCACTATTCTTTTTCAGCCGTCACTGCTGTTCTTGCGGTCAACTATCTCGATAGGTTCTTATTATATAGCTTCCAATTTCAGAGAGATGAGAAGGAGAAGCCATGGATGTCCCAGCTTGTTGCTGTCACTTGTCTCTCTCTTGCTGCTAAAGTTGAAGAGACCCATGTCCCCCTTCTTTTAGACCTCCAAGTGGAGGAGACTAAGTATGTTTTTGAGGCGAAAACAATTCAGAAAATGGAGATTTTAGTCCTTTCTAGTCTTCAATGGAAGATGAATCCAGTGACCCCACTTTCATTTATTGATTACACTATGAGAAGGCTTGGGTTAAAGAATCACATCTGCTTTGAATTTCTCAAGAGATGCGAGTGTCTCCTTGTCTCTGTTATCGCTGATTTGAGGTCAATGTGTTATCTTCCTTCTGTGATAGCCACTGTGACAATGGTGTACGTAATGAATAGTACTATAGAGCCCCCCCCCTGTATTGGACTAGAATACCAAACCCAGATATTGGCCATCCTCGGGATCGATAAGGACAAATTGGAAGATTGTTGTAACCTAATCCAAGAGTTGACCTCACGAGGATTTGGCCAATACCAATCAAACAAACGCAAGTTCGGATCATTACCCGGCAGCCCAAATGGGGTAATGGATATTTCTCTCTGCTCCGATAGCTCGAATGATTCATGGGAGGTGGCGGCTTCGCCGGAGCCTCTGTCTAAGAAGAGCAAGACTGAGGATATATGTTAG

Network for GWHGAAZE014134

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.24	Cyclin_N	82	191	2.80E-26
PF02984.20	Cyclin_C	193	306	6.80E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14505	CYCD3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.919
	SRR3591706	second leaf	2.608
	SRR3591707	mature leaf	0.285
	SRR3591708	Shoot apex	18.411
	SRR3591709	Stem	2.491
	SRR3591710	White floral bud	0.611
	SRR3591711	White flower	0.398
	SRR3591712	Green floral bud	2.211
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	9.417
	SRR8316896	Juvenile bud stage	9.047
	SRR8316897	Juvenile bud stage	4.241
	SRR8316894	Third green stage	4.848
	SRR8316900	Third green stage	18.317
	SRR8316901	Third green stage	13.867
	SRR8316898	Complete white stage	0.153
	SRR8316899	Complete white stage	5.939
	SRR8316903	Complete white stage	0.676
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.221
	SRR8316905	Silver flowering stage	0.066
	SRR8316906	Gold flowering stage	0.397
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	1.701
SRP132670	SRR6706286	Control	10.672
	SRR6706287	Light intensity 50%	10.577
	SRR6706288	Light intensity 20%	10.944
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.088
	CNS0095593	Slightly white alabastrum(diploid) 2	3.922
	CNS0095594	Slightly white alabastrum(diploid) 3	3.004
	CNS0095595	Whole white alabastrum(diploid) 2	7.455
	CNS0095596	Whole white alabastrum(diploid) 3	8.345
	CNS0095597	Whole white alabastrum(diploid) 4	5.224
	CNS0095598	Silvery flower (diploied) 1	0.856
	CNS0095599	Silvery flower (diploied) 2	0.764
	CNS0095600	Silvery flower (diploied) 3	0.106
	CNS0095601	Golden flower (diploid) 1	0.882
	CNS0095602	Golden flower (diploid) 2	0.653
	CNS0095603	Golden flower (diploid) 3	1.043
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.571
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.787
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.586
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.117
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.023
	CNS0095610	Silvery flower (tetraploid) 1	0.369
	CNS0095611	Silvery flower (tetraploid) 2	0.167
	CNS0095612	Silvery flower (tetraploid) 3	0.412
	CNS0095613	Golden flower (tetraploid) 1	0.065
	CNS0095614	Golden flower (tetraploid) 2	0.570
	CNS0095615	Golden flower (tetraploid) 3	0.163
CRA001975	CRR073297	Stem 1	8.033
	CRR073298	Stem 2	8.095
	CRR073299	Stem 3	11.195
	CRR073300	Leaf 1	7.626
	CRR073301	Leaf 2	9.039
	CRR073302	Leaf 3	10.654
	CRR073303	Juvenile bud 1	4.666
	CRR073304	Juvenile bud 2	3.971
	CRR073305	Juvenile bud 3	5.152
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.002
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.006
	CRR073310	Second white 2	0.006
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.097
	CRR073313	Silver flowering 2	0.280
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.342
	CRR073316	Gold flowering 2	3.171
	CRR073317	Gold flowering 3	2.711
	CRR073318	Tawny withering 1	1.083
	CRR073319	Tawny withering 2	1.285
	CRR073320	Tawny withering 3	0.554