Detail information of GWHGAAZE014142


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010059870.11.27957E-61PREDICTED: uncharacterized protein LOC104447838 isoform X2 [Eucalyptus grandis]
trEMBLtr|E0CP63|E0CP63_VITVI2E-61Putative uncharacterized protein {ECO:0000313|EMBL:CBI19441.3}
TAIR10AT5G01450.12E-12RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene66879486688622+
GWHAAZE00000004mRNA66879486688622+
GWHAAZE00000004exon66879486688059+
GWHAAZE00000004exon66881476688373+
GWHAAZE00000004exon66884826688622+
GWHAAZE00000004CDS66879486688059+
GWHAAZE00000004CDS66881476688373+
GWHAAZE00000004CDS66884826688622+
Transcript Sequence

Network for GWHGAAZE014142

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0093


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16040.6DUF4792831462.30E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.698
SRR3591706second leaf0.000
SRR3591707mature leaf0.307
SRR3591708Shoot apex1.351
SRR3591709Stem8.542
SRR3591710White floral bud2.409
SRR3591711White flower0.550
SRR3591712Green floral bud3.266
SRR3591713Yellow flower0.036
SRP173429 SRR8316895Juvenile bud stage 4.620
SRR8316896Juvenile bud stage 4.401
SRR8316897Juvenile bud stage 1.742
SRR8316894Third green stage 3.368
SRR8316900Third green stage 1.165
SRR8316901Third green stage 3.000
SRR8316898Complete white stage 0.214
SRR8316899Complete white stage 2.594
SRR8316903Complete white stage 1.443
SRR8316902Silver flowering stage0.117
SRR8316904Silver flowering stage0.011
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.467
SRR8316907Gold flowering stage 0.494
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.361
SRR6706287Light intensity 50%1.763
SRR6706288Light intensity 20%1.553
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.405
CNS0095593Slightly white alabastrum(diploid) 26.984
CNS0095594Slightly white alabastrum(diploid) 39.075
CNS0095595Whole white alabastrum(diploid) 23.039
CNS0095596Whole white alabastrum(diploid) 34.058
CNS0095597Whole white alabastrum(diploid) 46.125
CNS0095598Silvery flower (diploied) 12.722
CNS0095599Silvery flower (diploied) 22.435
CNS0095600Silvery flower (diploied) 30.654
CNS0095601Golden flower (diploid) 12.209
CNS0095602Golden flower (diploid) 20.985
CNS0095603Golden flower (diploid) 30.702
CNS0095604Slightly white alabastrum(tetraploid) 13.921
CNS0095605Slightly white alabastrum(tetraploid) 24.280
CNS0095606Slightly white alabastrum(tetraploid) 33.448
CNS0095607Whole white alabastrum(tetraploid) 16.103
CNS0095608Whole white alabastrum(tetraploid) 22.540
CNS0095609Whole white alabastrum(tetraploid) 30.685
CNS0095610Silvery flower (tetraploid) 10.289
CNS0095611Silvery flower (tetraploid) 20.195
CNS0095612Silvery flower (tetraploid) 30.369
CNS0095613Golden flower (tetraploid) 10.059
CNS0095614Golden flower (tetraploid) 20.229
CNS0095615Golden flower (tetraploid) 30.084
CRA001975CRR073297Stem 12.571
CRR073298Stem 22.481
CRR073299Stem 30.608
CRR073300Leaf 10.405
CRR073301Leaf 20.006
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.013
CRR073306Third green 10.077
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.001
CRR073311Second white 30.000
CRR073312Silver flowering 10.149
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 21.202
CRR073320Tawny withering 31.430