Gene detail

Detail information of GWHGAAZE014143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664531.1	7.36573E-75	PREDICTED: uncharacterized protein LOC100248821 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q84ME1\|LUL3_ARATH	0.00000002	Probable E3 ubiquitin-protein ligase LUL3
trEMBL	tr\|E0CP63\|E0CP63_VITVI	2E-74	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19441.3}
TAIR10	AT4G24204.3	2E-18	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6688929	6689835	+
GWHAAZE00000004	mRNA	6688929	6689835	+
GWHAAZE00000004	exon	6688929	6689048	+
GWHAAZE00000004	exon	6689140	6689209	+
GWHAAZE00000004	exon	6689366	6689600	+
GWHAAZE00000004	exon	6689694	6689748	+
GWHAAZE00000004	exon	6689830	6689835	+
GWHAAZE00000004	CDS	6688929	6689048	+
GWHAAZE00000004	CDS	6689140	6689209	+
GWHAAZE00000004	CDS	6689366	6689600	+
GWHAAZE00000004	CDS	6689694	6689748	+
GWHAAZE00000004	CDS	6689830	6689835	+

Transcript Sequence
>GWHTAAZE014157 TCATCGAAGATGTACGATACCACGAAAGCAAAGAGTGCCTGTTCAACAGTAGATGGATCATGCCATCTCAATCTTTGCTTCCCAAATGCCCATTTTGTCACAGTAACTACACCAAACAATGGAGATCTTGGTGGATGGTATGTTGAACTTTCATACGTGGCTCGTGTTGTAACCTATATTTCGATTTTAGGGTGGCCTGAAGAGGAACCACTAGTTCGAGAAATAACTGAGAACTACCCATTGATCCCAGAGAAGACTTTTCGATTGCCATATGGAACAGATGACGAGGAGGTGGAGTCTGGCAAATCTAGCTCTTCAGAGGATTTATATGATGGGAAGATTTGTGTAATTTGCTATGATATGCCAAGAAATTGCTTCATTGTTCCTTGTGGCCATTGTGCCACTTGCTATGACTGTGTTCAAAGGATTATGAATGGGGAGAGCAAGGTGTGTCCTATATGTCGAAGGCTGATTCACAAAAGATAG

Network for GWHGAAZE014143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0093

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16041.6	DUF4793	2	64	6.50E-13
PF13920.7	zf-C3HC4_3	113	160	6.20E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.062
	SRR3591706	second leaf	0.654
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.835
	SRR3591709	Stem	13.558
	SRR3591710	White floral bud	2.261
	SRR3591711	White flower	1.987
	SRR3591712	Green floral bud	4.160
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.368
	SRR8316896	Juvenile bud stage	6.202
	SRR8316897	Juvenile bud stage	2.497
	SRR8316894	Third green stage	2.099
	SRR8316900	Third green stage	3.282
	SRR8316901	Third green stage	3.998
	SRR8316898	Complete white stage	0.200
	SRR8316899	Complete white stage	5.070
	SRR8316903	Complete white stage	0.907
	SRR8316902	Silver flowering stage	0.021
	SRR8316904	Silver flowering stage	0.400
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.174
	SRR8316908	Gold flowering stage	0.511
SRP132670	SRR6706286	Control	0.128
	SRR6706287	Light intensity 50%	0.374
	SRR6706288	Light intensity 20%	0.362
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.164
	CNS0095593	Slightly white alabastrum(diploid) 2	4.138
	CNS0095594	Slightly white alabastrum(diploid) 3	10.116
	CNS0095595	Whole white alabastrum(diploid) 2	7.977
	CNS0095596	Whole white alabastrum(diploid) 3	6.717
	CNS0095597	Whole white alabastrum(diploid) 4	6.166
	CNS0095598	Silvery flower (diploied) 1	2.244
	CNS0095599	Silvery flower (diploied) 2	3.907
	CNS0095600	Silvery flower (diploied) 3	0.982
	CNS0095601	Golden flower (diploid) 1	4.813
	CNS0095602	Golden flower (diploid) 2	1.756
	CNS0095603	Golden flower (diploid) 3	1.798
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.894
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.484
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.024
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.824
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.924
	CNS0095610	Silvery flower (tetraploid) 1	0.323
	CNS0095611	Silvery flower (tetraploid) 2	0.334
	CNS0095612	Silvery flower (tetraploid) 3	0.650
	CNS0095613	Golden flower (tetraploid) 1	0.207
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.033
CRA001975	CRR073297	Stem 1	1.191
	CRR073298	Stem 2	1.558
	CRR073299	Stem 3	0.110
	CRR073300	Leaf 1	0.448
	CRR073301	Leaf 2	0.228
	CRR073302	Leaf 3	0.004
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.003
	CRR073305	Juvenile bud 3	0.318
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.016
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.148
	CRR073310	Second white 2	0.151
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.269
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.239
	CRR073319	Tawny withering 2	1.449
	CRR073320	Tawny withering 3	0.633