Gene detail

Detail information of GWHGAAZE014151

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AIW09146.1	0	progesterone 5-beta-reductase 4 [Catharanthus roseus]
Swissprot	tr\|Q6PQJ9\|5BPOR_DIGLA	0	3-oxo-Delta(4,5)-steroid 5-beta-reductase
trEMBL	tr\|A0A067LC28\|A0A067LC28_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP41649.1}
TAIR10	AT4G24220.1	8E-147	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6812606	6814078	+
GWHAAZE00000004	mRNA	6812606	6814078	+
GWHAAZE00000004	exon	6812606	6813364	+
GWHAAZE00000004	exon	6813590	6814078	+
GWHAAZE00000004	CDS	6812606	6813364	+
GWHAAZE00000004	CDS	6813590	6813982	+
GWHAAZE00000004	three_prime_UTR	6813983	6814078	+

Transcript Sequence
>GWHTAAZE014165 ATGTTTTGCGCGCAGAAAAAATTCGACGATGACGATGCACCGAAAGGCTTTCAAAGTGTCGCCCTCGTCATAGGCATCACTGGAATCGTCGGCAACAGCTTGGCGGAGATCCTCCCTCTCTCCGACACCCCTGGCGGCCCATGGAAGGTTTATGGCGTAGCCCGCCGCCCCCGCCCGTCCTGGAACGCCGACCACCCAGTTGAATACATCCAATGTGACATCTCCGACACAGAACAAACCCTCACCAAACTCTCCCCACTCACCGATGTCACACACATCTTCTGGAACACCTGGGCCAACGGCGGGGCTGAAGCTGTATGCTGCGAGATCAACGGCACAATGCTAAAAAATGTCCTTGCAGCTGCTATCCCTAACGCTCCCAACCTCCGCCATATATGCCTGCAAACCGGCCACAAACACTACATCGGTCCGTTCGAATCTTTCGGCAAAATCACGCCCCATGATACTCCATTCGTCGAGGACGTTCCCCGATTGAACGTCACAAATTTTTACTACACCCTCGAAGACATTACCGCCGAGGCAGCCGCTCGGAAAAACGGAGCACTAACGTGGTCAGTACACCGGCCAGCGGTCATATTCGGCTTCTCCCCTTACAGCATGATGAACCTGGTGGGGACCATTTGCGTGTACGCTGCAATCTGCAAGCACGAGAAGGCACCATTTAAATTCCCTGGAGCCAAAGCGGCGTGGGATTGCTACTCCGTCGCGTCCGACGCTGACTTGATCGCGGAGCACCAAATCTGGGCAGCAGTGGACCCGAACGCGAAGAACGAAGGGTTTAATTGCAGCAACGGGGATTTGTTCAAGTGGAAGCATTTGTGGAAGGTATTGGCCGAACAATTTGAGGTGGAGTATGTGGAATTTGACGAGAATGAAGCAGCGGTGAGCTTGTCAGAGAGGATGAAAGAGAAGGGTCCGGTGTGGGAAGATATGGTGAAGGAGAATGGGCTGACGCCGACGAAATTGGAGGAAGTGGCGTCGTTTTGGTTTGCGGATGTGATATTTAGTGGAGAGTGTATGTTGGATAGCATGAACAAGAGCAAAGAGCATGGTTTCTTGGGCTTTAGGAACACCAAGAATTCTCTCATTAATGTCATTGATAAAATGAAAGCTTACAAAATTGTTCCTTAATTAGGTAATTGATAGTGTTACCACACCGCTTACATTTTATTTGTTTTGGCAGCTTTGTAATATTATTGTTGGTACGTGCATTTTTAAATAAAGATT

Network for GWHGAAZE014151

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	84.627
	SRR3591706	second leaf	294.747
	SRR3591707	mature leaf	37.781
	SRR3591708	Shoot apex	266.697
	SRR3591709	Stem	0.706
	SRR3591710	White floral bud	3.329
	SRR3591711	White flower	0.790
	SRR3591712	Green floral bud	37.472
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	113.192
	SRR8316896	Juvenile bud stage	63.485
	SRR8316897	Juvenile bud stage	28.251
	SRR8316894	Third green stage	7.991
	SRR8316900	Third green stage	3.459
	SRR8316901	Third green stage	6.199
	SRR8316898	Complete white stage	0.069
	SRR8316899	Complete white stage	10.098
	SRR8316903	Complete white stage	0.681
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.110
	SRR8316905	Silver flowering stage	0.053
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	16.452
	SRR6706287	Light intensity 50%	11.864
	SRR6706288	Light intensity 20%	11.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	194.152
	CNS0095593	Slightly white alabastrum(diploid) 2	135.934
	CNS0095594	Slightly white alabastrum(diploid) 3	199.761
	CNS0095595	Whole white alabastrum(diploid) 2	169.419
	CNS0095596	Whole white alabastrum(diploid) 3	17.402
	CNS0095597	Whole white alabastrum(diploid) 4	98.700
	CNS0095598	Silvery flower (diploied) 1	13.419
	CNS0095599	Silvery flower (diploied) 2	18.523
	CNS0095600	Silvery flower (diploied) 3	0.651
	CNS0095601	Golden flower (diploid) 1	1.289
	CNS0095602	Golden flower (diploid) 2	0.180
	CNS0095603	Golden flower (diploid) 3	0.116
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.671
	CNS0095605	Slightly white alabastrum(tetraploid) 2	158.874
	CNS0095606	Slightly white alabastrum(tetraploid) 3	301.862
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.854
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.820
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.982
	CNS0095610	Silvery flower (tetraploid) 1	0.114
	CNS0095611	Silvery flower (tetraploid) 2	0.061
	CNS0095612	Silvery flower (tetraploid) 3	0.132
	CNS0095613	Golden flower (tetraploid) 1	0.092
	CNS0095614	Golden flower (tetraploid) 2	0.056
	CNS0095615	Golden flower (tetraploid) 3	0.058
CRA001975	CRR073297	Stem 1	78.032
	CRR073298	Stem 2	85.734
	CRR073299	Stem 3	95.502
	CRR073300	Leaf 1	6.319
	CRR073301	Leaf 2	4.421
	CRR073302	Leaf 3	4.702
	CRR073303	Juvenile bud 1	14.930
	CRR073304	Juvenile bud 2	9.849
	CRR073305	Juvenile bud 3	9.495
	CRR073306	Third green 1	0.921
	CRR073307	Third green 2	2.212
	CRR073308	Third green 3	0.380
	CRR073309	Second white 1	0.064
	CRR073310	Second white 2	0.098
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.076
	CRR073313	Silver flowering 2	0.108
	CRR073314	Silver flowering 3	0.014
	CRR073315	Gold flowering 1	24.156
	CRR073316	Gold flowering 2	26.623
	CRR073317	Gold flowering 3	43.274
	CRR073318	Tawny withering 1	154.902
	CRR073319	Tawny withering 2	95.927
	CRR073320	Tawny withering 3	296.996