Gene detail

Detail information of GWHGAAZE014157

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664529.1	0	PREDICTED: transcription initiation factor TFIID subunit 4b-like [Vitis vinifera]
Swissprot	tr\|F4K4L7\|TAF4B_ARATH	4E-159	Transcription initiation factor TFIID subunit 4b
trEMBL	tr\|F6GZN3\|F6GZN3_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45765.1}
TAIR10	AT5G43130.1	1E-121	TBP-associated factor 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6888505	6893665	-
GWHAAZE00000004	mRNA	6888505	6893665	-
GWHAAZE00000004	exon	6893545	6893665	-
GWHAAZE00000004	exon	6893311	6893416	-
GWHAAZE00000004	exon	6892196	6892726	-
GWHAAZE00000004	exon	6892022	6892117	-
GWHAAZE00000004	exon	6890778	6891698	-
GWHAAZE00000004	exon	6890434	6890567	-
GWHAAZE00000004	exon	6890237	6890324	-
GWHAAZE00000004	exon	6889991	6890126	-
GWHAAZE00000004	exon	6889843	6889898	-
GWHAAZE00000004	exon	6889712	6889768	-
GWHAAZE00000004	exon	6889489	6889629	-
GWHAAZE00000004	exon	6889335	6889400	-
GWHAAZE00000004	exon	6888801	6889074	-
GWHAAZE00000004	exon	6888505	6888677	-
GWHAAZE00000004	five_prime_UTR	6893545	6893665	-
GWHAAZE00000004	five_prime_UTR	6893311	6893416	-
GWHAAZE00000004	five_prime_UTR	6892628	6892726	-
GWHAAZE00000004	CDS	6892196	6892627	-
GWHAAZE00000004	CDS	6892022	6892117	-
GWHAAZE00000004	CDS	6890778	6891698	-
GWHAAZE00000004	CDS	6890434	6890567	-
GWHAAZE00000004	CDS	6890237	6890324	-
GWHAAZE00000004	CDS	6889991	6890126	-
GWHAAZE00000004	CDS	6889843	6889898	-
GWHAAZE00000004	CDS	6889712	6889768	-
GWHAAZE00000004	CDS	6889489	6889629	-
GWHAAZE00000004	CDS	6889335	6889400	-
GWHAAZE00000004	CDS	6888801	6889074	-
GWHAAZE00000004	CDS	6888505	6888677	-

Transcript Sequence
>GWHTAAZE014171 TCCAGCGAACAGATCAATTGGCCGTAACATACATATAAATCAGTAAACCCTTAACCTGTCTACAAAATCAATCAACTCTGTAATGGACCCTTCAATAATGAAGCTCCTTGAAGAAGACGAGGACGAAACTATGCATTCGGGGGCTGACGTTGAGGCGTTCACAGCTGCCCTAAACAGGGACATTGAAGGCGATTCCTCCACCTTTCAGCCCTCTGATTCAGATTCTGCAGCATTTGGTCAAGGAAGCAATCATACTTACAAGTCGATTTCCACCTTGGCAAACTTCCAACCTTGATGAAAACACCAATTGTCAAAGCCAACAAGGCATGAAGGTTTCACAACAACAAGAGCAACATTCATCTCTGATGGAGCTAAACCAACATGGATCTGGTTCTGAGATTCAGCAACAACAATTAGACAACGTACAAGAACTGAATCGTCTCCCTATGCAACAGAAACAATCCCAAGATGATAGCCCACAGCAGCAAGCCAAACAGAAAAGCATTCCAATGTCTCAAACAAGGAGTATGCAGGATTCTGAAACAAATACTAATGTTCAAGAGCCAGAGAGAACTGAACATCTAGAACCAAGGTTACAGAAGATGAGTGGTCATCAACCGGCAATAGCAGCAGGGCAGGCGATTAACATAATGAATCGCAACAAACAAGTGCCATTTGCCCTTTTGGTTCCAGTCATAGAGCCGCAACTTGATAAAGACAAAGCCATGCAATTCCAGAGAGTCTATACTCAACTGAAGCAAAATGAAATCTCCAAAGATGTATTTGTCCGACACATGAGAAGTATTGTGGGGGACCAGGTGCTCAAGATGGCAGTATATAAGTTGCAGGGGCAGGCTGCTCGAATCTCACAGAGTGGACCCAACCATTTTCCATCACAGTCTCATGTTTCAGCGCAACATATGCAAATGCCACCTATGAGAGCTAAGCATGTATCTGATCCACAAGCATTCTCACATCTTCGTCCTAAGAATCTTGGCTCTTCAGACCAATCTCAAATTCCCTCTTCAGCTGCTCAAAACTTGACCGATGCAAGCAATCTTAAAATGTCTAATAATGCTCAAACATCAAGAGAGGTGGAACGCCAATCAGACTCCCATGGAGTACAAGGAAACCAAATGCCTTCTTCATCAAGTTTTGGTACTGTCAAGCAAGAACAGGATCGCTCTTTCCCAGTACAAGGACTTACCAAGCAGCAACAACAGCATTTGCACTTCTCACAGTCTTCTTTTCCCACATACGGAGGTAGTACTAGCACTAGTTACCCATATTCTGGGACAAATGTTAATAGTTCGGCACAATCTTTGAGGCAAATTCCAGTTCATCCACGAATGGGTGAAACTCAGTTAGGAACAACAACTCAGTCCATGAACACGATGAGTCTGCCCGATTTTGAGAGGCAGGGTTCTTTAAGTGAGCCAAAGAGAATGCAGGATGGGGCACTTTCTCACTTGTCGAATAATTCTACATTGCAACATAATTCAGTTCATTGGCAACCATCAACCAATAAAGAACAGAAGAATGGTGCTCTGTCGTCGATGACTTATGTAAAACAGGAACAAATTGATCAAACAAATGAGCAGCAGCAGAAATCGCAGTTGTCTACTCGACAAGGATTATCTTCTTTCCCTCCTGCTGAACAGGGAAACGGAATTCCAGGGAGTTTGAGGGAGGAATCCTTTGATACGCCATCCTCTAGGACGGGTTTCTCAACACCTGCAAGATCCATAACAGCACAGTTGGAACTTAATTCATCATTAAACTCTCGGATCCCACCCACAACCCCTCCAGTTGGGCCTGGAAGTAATGCAAAGCCAACGCCCAAAAAGCCTCCTTCTATTGGCCAGAAAAAGCCACTGGAAGCACTTGGTTCTTCACCACCTCTGCCAGGTAAGAAGCAAAAAGTAGCTGGATCTTTCTCAGATCAAAGTATCGAACAACTCAATGATGTCACTGCCGTCAGTGGAGTAAATCTCAGGGAAGAGGAAGAACAACTATTTTCTGGGCCCAAGGAAGATAGTCAAGCTTCAGAAGCTTCTCGTCGAGTTGTGCAAGAAGAAGAAGAAAGGATGTTTTTGCAGAAAATCCCACTTCATAAAAAGTTGGCAGAAATCATGACAAAAAGTGGTCTAAAGGGTATTAGTGCGGATGTGGAACGATGCTTATCATTGTGCGTGGAGGAACGAATGCGTGGGCTGCTAAGTAATCTGGTCAGATTGTCAAAACAGCGGGTTGATATTGAGAAGCCAAGGCACCGGACTGTTATCACCTCAGATGTTGGGCAGCAGATCTTGATAATGAACAGGAAAACCAGGGAAGAATGGGAGCAAAAACAAGCTGATGTAGAAAAACTCCAGAAAATTAATGATTCTGAAGGTAATATTGGAGTTGATGGCGACAAGGACAAGGAAGATGGCCGTGTAAAATCTATTAAGATGCAGGCAAACAAAGAGGAAGACGACAAGATGCGGACCACAGCTGCAAATGTTGCAGCTCGGGCTGCCGTTGGAGGAGACGACGTGCTGTCGAAATGGCAACTAATGGCTGAGCAGGCCCGGCAGAAGCGTGAGGGTGGGCCCGATGTAGCTTCTGGTTCTCAGCCAGCTAAAGATACAGGTCGTAAGCCTGTATCAACAACTTCTGTAAGAAATGCAAAGGATAATCAAGAAGCTGAAAACAGAAGCCTCTCCACCTCTGTTACTACATCTGCAGGTGTAAGGAAATCTGGGAGGAATCAATTTACTGTGCCCCAATCTAGGATGGCTCGTAGTATCTCCGTGAAGGATGTCATTGCCGTCCTAGAAAGAGAGCCTCAGACATCAAAGACCACTCTAATATATCGCTTATATGAGAAAATGCGCACTAATGCTGTAGCTGAATGA

Network for GWHGAAZE014157

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12174.9	RST	111	174	5.70E-20
PF05236.15	TAF4	545	846	4.90E-78

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03129	TAF4	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006352	biological_process	DNA-templated transcription, initiation
GO:0005669	cellular_component	transcription factor TFIID complex

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.407
	SRR3591706	second leaf	20.865
	SRR3591707	mature leaf	16.692
	SRR3591708	Shoot apex	27.399
	SRR3591709	Stem	25.695
	SRR3591710	White floral bud	26.585
	SRR3591711	White flower	40.017
	SRR3591712	Green floral bud	23.133
	SRR3591713	Yellow flower	28.389
SRP173429	SRR8316895	Juvenile bud stage	18.282
	SRR8316896	Juvenile bud stage	25.522
	SRR8316897	Juvenile bud stage	10.034
	SRR8316894	Third green stage	12.631
	SRR8316900	Third green stage	25.236
	SRR8316901	Third green stage	25.536
	SRR8316898	Complete white stage	7.871
	SRR8316899	Complete white stage	27.521
	SRR8316903	Complete white stage	19.159
	SRR8316902	Silver flowering stage	12.381
	SRR8316904	Silver flowering stage	20.715
	SRR8316905	Silver flowering stage	8.485
	SRR8316906	Gold flowering stage	27.734
	SRR8316907	Gold flowering stage	26.807
	SRR8316908	Gold flowering stage	27.668
SRP132670	SRR6706286	Control	30.094
	SRR6706287	Light intensity 50%	31.589
	SRR6706288	Light intensity 20%	31.037
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.924
	CNS0095593	Slightly white alabastrum(diploid) 2	14.854
	CNS0095594	Slightly white alabastrum(diploid) 3	14.180
	CNS0095595	Whole white alabastrum(diploid) 2	15.538
	CNS0095596	Whole white alabastrum(diploid) 3	12.920
	CNS0095597	Whole white alabastrum(diploid) 4	13.622
	CNS0095598	Silvery flower (diploied) 1	21.809
	CNS0095599	Silvery flower (diploied) 2	16.283
	CNS0095600	Silvery flower (diploied) 3	23.624
	CNS0095601	Golden flower (diploid) 1	20.816
	CNS0095602	Golden flower (diploid) 2	24.390
	CNS0095603	Golden flower (diploid) 3	23.347
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.843
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.414
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.111
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.356
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.472
	CNS0095610	Silvery flower (tetraploid) 1	26.060
	CNS0095611	Silvery flower (tetraploid) 2	22.214
	CNS0095612	Silvery flower (tetraploid) 3	19.406
	CNS0095613	Golden flower (tetraploid) 1	15.773
	CNS0095614	Golden flower (tetraploid) 2	22.816
	CNS0095615	Golden flower (tetraploid) 3	17.019
CRA001975	CRR073297	Stem 1	35.404
	CRR073298	Stem 2	32.028
	CRR073299	Stem 3	25.620
	CRR073300	Leaf 1	32.577
	CRR073301	Leaf 2	29.687
	CRR073302	Leaf 3	19.012
	CRR073303	Juvenile bud 1	20.235
	CRR073304	Juvenile bud 2	12.817
	CRR073305	Juvenile bud 3	26.270
	CRR073306	Third green 1	7.235
	CRR073307	Third green 2	6.480
	CRR073308	Third green 3	8.436
	CRR073309	Second white 1	8.117
	CRR073310	Second white 2	12.516
	CRR073311	Second white 3	12.948
	CRR073312	Silver flowering 1	10.591
	CRR073313	Silver flowering 2	11.769
	CRR073314	Silver flowering 3	10.977
	CRR073315	Gold flowering 1	9.949
	CRR073316	Gold flowering 2	16.011
	CRR073317	Gold flowering 3	5.510
	CRR073318	Tawny withering 1	20.018
	CRR073319	Tawny withering 2	17.914
	CRR073320	Tawny withering 3	19.336