Detail information of GWHGAAZE014170


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007018498.17.6166E-162Galactose oxidase/kelch repeat superfamily protein [Theobroma cacao]
Swissprottr|Q9FHS6|FK119_ARATH8E-89F-box/kelch-repeat protein At5g43190
trEMBLtr|A0A061FFR2|A0A061FFR2_THECC3E-162Galactose oxidase/kelch repeat superfamily protein {ECO:0000313|EMBL:EOY15723.1}
TAIR10AT5G43190.13E-52Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene70966327097753-
GWHAAZE00000004mRNA70966327097753-
GWHAAZE00000004exon70966327096793-
GWHAAZE00000004exon70968727097753-
GWHAAZE00000004CDS70968727097753-
GWHAAZE00000004CDS70966327096793-
Transcript Sequence

Network for GWHGAAZE014170

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box21641.10E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.693
SRR3591706second leaf2.024
SRR3591707mature leaf3.001
SRR3591708Shoot apex7.782
SRR3591709Stem5.120
SRR3591710White floral bud5.559
SRR3591711White flower3.285
SRR3591712Green floral bud6.230
SRR3591713Yellow flower3.371
SRP173429 SRR8316895Juvenile bud stage 1.934
SRR8316896Juvenile bud stage 2.448
SRR8316897Juvenile bud stage 0.857
SRR8316894Third green stage 0.994
SRR8316900Third green stage 2.872
SRR8316901Third green stage 2.602
SRR8316898Complete white stage 0.681
SRR8316899Complete white stage 15.543
SRR8316903Complete white stage 1.027
SRR8316902Silver flowering stage0.646
SRR8316904Silver flowering stage1.156
SRR8316905Silver flowering stage0.500
SRR8316906Gold flowering stage 2.259
SRR8316907Gold flowering stage 1.132
SRR8316908Gold flowering stage 0.784
SRP132670SRR6706286Control4.520
SRR6706287Light intensity 50%3.813
SRR6706288Light intensity 20%4.390
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.028
CNS0095593Slightly white alabastrum(diploid) 21.276
CNS0095594Slightly white alabastrum(diploid) 31.995
CNS0095595Whole white alabastrum(diploid) 21.869
CNS0095596Whole white alabastrum(diploid) 31.259
CNS0095597Whole white alabastrum(diploid) 41.494
CNS0095598Silvery flower (diploied) 12.101
CNS0095599Silvery flower (diploied) 22.793
CNS0095600Silvery flower (diploied) 32.008
CNS0095601Golden flower (diploid) 13.418
CNS0095602Golden flower (diploid) 22.758
CNS0095603Golden flower (diploid) 32.814
CNS0095604Slightly white alabastrum(tetraploid) 11.884
CNS0095605Slightly white alabastrum(tetraploid) 22.200
CNS0095606Slightly white alabastrum(tetraploid) 34.768
CNS0095607Whole white alabastrum(tetraploid) 12.840
CNS0095608Whole white alabastrum(tetraploid) 21.227
CNS0095609Whole white alabastrum(tetraploid) 33.238
CNS0095610Silvery flower (tetraploid) 11.898
CNS0095611Silvery flower (tetraploid) 22.184
CNS0095612Silvery flower (tetraploid) 31.502
CNS0095613Golden flower (tetraploid) 11.221
CNS0095614Golden flower (tetraploid) 21.800
CNS0095615Golden flower (tetraploid) 30.967
CRA001975CRR073297Stem 13.791
CRR073298Stem 23.856
CRR073299Stem 34.499
CRR073300Leaf 13.136
CRR073301Leaf 22.653
CRR073302Leaf 33.218
CRR073303Juvenile bud 11.648
CRR073304Juvenile bud 22.158
CRR073305Juvenile bud 33.083
CRR073306Third green 10.105
CRR073307Third green 20.164
CRR073308Third green 30.907
CRR073309Second white 10.658
CRR073310Second white 20.035
CRR073311Second white 30.428
CRR073312Silver flowering 10.202
CRR073313Silver flowering 20.148
CRR073314Silver flowering 30.097
CRR073315Gold flowering 11.223
CRR073316Gold flowering 22.802
CRR073317Gold flowering 34.322
CRR073318Tawny withering 15.690
CRR073319Tawny withering 26.157
CRR073320Tawny withering 35.064