Gene detail

Detail information of GWHGAAZE014180

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074343.1	0	PREDICTED: cirhin [Sesamum indicum]
Swissprot	tr\|Q6NLV4\|FY_ARATH	0.0000005	Flowering time control protein FY
trEMBL	tr\|A0A067GS19\|A0A067GS19_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO81485.1}
TAIR10	AT4G07410.1	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7279985	7288756	-
GWHAAZE00000004	mRNA	7279985	7288756	-
GWHAAZE00000004	exon	7279985	7280268	-
GWHAAZE00000004	exon	7280443	7280702	-
GWHAAZE00000004	exon	7281230	7281411	-
GWHAAZE00000004	exon	7282692	7283287	-
GWHAAZE00000004	exon	7283390	7283543	-
GWHAAZE00000004	exon	7286376	7286538	-
GWHAAZE00000004	exon	7286671	7286784	-
GWHAAZE00000004	exon	7287691	7287754	-
GWHAAZE00000004	exon	7287847	7288150	-
GWHAAZE00000004	exon	7288373	7288516	-
GWHAAZE00000004	exon	7288595	7288756	-
GWHAAZE00000004	CDS	7288595	7288756	-
GWHAAZE00000004	CDS	7288373	7288516	-
GWHAAZE00000004	CDS	7287847	7288150	-
GWHAAZE00000004	CDS	7287691	7287754	-
GWHAAZE00000004	CDS	7286671	7286784	-
GWHAAZE00000004	CDS	7286376	7286538	-
GWHAAZE00000004	CDS	7283390	7283543	-
GWHAAZE00000004	CDS	7282692	7283287	-
GWHAAZE00000004	CDS	7281230	7281411	-
GWHAAZE00000004	CDS	7280443	7280702	-
GWHAAZE00000004	CDS	7279985	7280268	-

Transcript Sequence
>GWHTAAZE014194 ATGCTCCAAGTCTACAAAACCAGCTCAGTAGAGTGGAAGCCATCTCCAGTAGTAGCCCTAGCGACTAGCGCCGATGACGCTCAAGTCGCCGCCGCTCGAGAAGACGGCTCCCTTGAGATTTGGTTGGTCTCTCCCGGCGCCGTCGGCTGGCACCGCCTGCTCACTGTACATGGAGACCCTAATTCTAGGGTTTCATCGCTTGTTTGGTGTCGTTCTGGTTCCCGTGGTGAAGCGCCCGGTCGGTTGTTCTCGTCTAGCATCGATGGATCGGTTTCTGAGTGGGACCTCTTTGATTTAAAACAGAAGATTGTGCTAGATTCACTTGGTGCCTCGATTTGGCAGATGGCCGTGGCACCTTCCAATGGATCGCAGCTTCACAAAAGGCAAGCTAATGGGTTTGTGGAAAATGGGTACACTAATGCAAAATTTGATGGTGGTGATGATGAATCGAGCGAGAGTGAAGATGATGTTGACTCAGTCGAGTTATGTGAAGAACTGTTTATTGAAAATACGTGTGTAGCTATTGCTTGTGATGATGGATGTGTACGGATATATAGTATATCTGACTCAGAACAATTGACTTACAATAAATCATTGCCAAGGGTCAGTGGACGTGTTCTGAGTGTGGCATGGAGCCCCGATGCGAATATGATATACTCTGGGAGTAGTGACGGGTTCATAAGATGCTGGGACTGTAAAATGGGTCATGAGGTCTACAGGATAACAGTTGGTCTCGGAGGTTTGGGCAGTGGACATGAATTTTGTATATGGTCACTGCTTGCACTCAGGTGCGGGACTCTTGTTAGTGCAGATAGTACTGGTAGTGTCCAATTTTGGGACAGTCAACATGGGACCCTTTTGCAGGCCTATTCTTTTCACAAGGGAGATGTCAATGCGCTGGCAGCAGCTCCAGGCCACAGCAGGGTGTTTTCTGCTGGTTCAGATGGTCAGGTTATACTTTATAAGCTCTCTACTGATGCAGTTTTACCTGACGATGAGATGTTTTCCTCAAAAGTGAGGAAAAAATGGGTATATGTTGGTTATGTGAGAGCTCATACGCATGACGTGAGGGCCTTAACTGTTGCGGTACCTATCAGTCGAGAAGATCTTTTACCCGATGCAAAGGTAAAAAGGGCTCGTGGCAAGGAGAAACCCATTGATTTTAGTTACCAGAAGTGGGCTCATATGGGTGTCCCCATGCTTATCTCTGCTGGTGATGACACTAAGCTGTATGCATATTCTGCAAATGAGTTCACCAAGTTCTCTCCACACGATATCTGCCCTGCCCCACAGGGACCACCCATTCAACTGGTTCTCAATACTGTGTACAATCAAACTCCTTTGCTTCTGATCCAGTCTTCTTACTGGTTAGATATTTTCTGTGTTCGTCTAAAAGAGGGTGCTGTAATTGACATGGGTTCTGGACCTGGAGGATTTGCAAGCACAGATATGGTGGCCCGAGTTAAGAGTAAGGCTTCTAGAAAGATCATTTGCAGCACCATGTCATCTTCTGGGGTGTTTTTTGCTTATTCAGACCATGTCAAACCTAATCTGTTTGAATTGAAAAAACATGAAGCTGCAAAAAGTTCATGGGTTATTATTAAAAGGAAACTTCCTCCAAGATTACCGTTTGCTCATTGCATGGCTTTCAGTATTGATTCTTCGCGATTGATGATAGCAGGGCATGATAAAAGGATATATGTTGTTGACGTGGGAAGCTTGGAACTAGTCCATGCCTTCACCCCTTGCCGTACGGAGCTTGACGAGGCATTGCCACCTAGTGAGCCTCCAATCACGAGAATTTTCAGTAGTTCTGATGGGCAGTGGCTAGCTGCCATTAACTGCTTTGGAGATATATACGTTTTTAATTTAGAGATACAAAGGCAACACTGGTTCATATCCAGATTAGATGGTGCCTCTGTTACAGCTGGTGGCTTCACTCCTCGAAACAGCAACATCCTTATAATATCCACGTCATCAAACCAGGTATACGCGTTTGATGTGGACGCCAAGCAGTTGGGGGAATGGTCCATGCGACACACATTTGTTATGCCTCGAAGATACCAAGAATTTCTGGAGAAGTTATTGGGCTTTCATTTCCACTCTCCTCGCATTCATCCTCAGTCATCATTTACAGTGCCAGTTGATTGGAATGATGACCATGACTTGGTACATGGCCGGGATTCAGCGTTGAAGAAGTTACAGAACTCCCCAATCAACGGAAAATTGAAACGTAAGTTGAAAGGCCATGAATTAGAGACTAGAATCAACGGCAGAAAGAATTTTGAATTCTGTGCATTTAGGAATCCTGTTTTATTTGTCGGACACCTTACAAAAAGTAGTGCGTTGATCATAGACAAACCATGGATGCAAGTGGTTAAAACATTAGATGCCCCTCCCGTCCACAGACATATTTACGGGACATAA

Network for GWHGAAZE014180

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	206	231	0.00023

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K14548	UTP4, CIRH1A	Ribosome biogenesis in eukaryotes	map03008

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.303
	SRR3591706	second leaf	10.310
	SRR3591707	mature leaf	11.874
	SRR3591708	Shoot apex	13.925
	SRR3591709	Stem	12.327
	SRR3591710	White floral bud	10.284
	SRR3591711	White flower	17.614
	SRR3591712	Green floral bud	12.777
	SRR3591713	Yellow flower	10.410
SRP173429	SRR8316895	Juvenile bud stage	8.671
	SRR8316896	Juvenile bud stage	10.885
	SRR8316897	Juvenile bud stage	5.052
	SRR8316894	Third green stage	4.401
	SRR8316900	Third green stage	12.749
	SRR8316901	Third green stage	11.437
	SRR8316898	Complete white stage	2.753
	SRR8316899	Complete white stage	13.748
	SRR8316903	Complete white stage	4.948
	SRR8316902	Silver flowering stage	4.097
	SRR8316904	Silver flowering stage	5.422
	SRR8316905	Silver flowering stage	2.824
	SRR8316906	Gold flowering stage	8.344
	SRR8316907	Gold flowering stage	7.418
	SRR8316908	Gold flowering stage	10.919
SRP132670	SRR6706286	Control	9.369
	SRR6706287	Light intensity 50%	9.048
	SRR6706288	Light intensity 20%	10.771
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.593
	CNS0095593	Slightly white alabastrum(diploid) 2	7.438
	CNS0095594	Slightly white alabastrum(diploid) 3	5.822
	CNS0095595	Whole white alabastrum(diploid) 2	6.552
	CNS0095596	Whole white alabastrum(diploid) 3	6.473
	CNS0095597	Whole white alabastrum(diploid) 4	5.080
	CNS0095598	Silvery flower (diploied) 1	10.013
	CNS0095599	Silvery flower (diploied) 2	10.933
	CNS0095600	Silvery flower (diploied) 3	12.670
	CNS0095601	Golden flower (diploid) 1	9.571
	CNS0095602	Golden flower (diploid) 2	10.278
	CNS0095603	Golden flower (diploid) 3	10.371
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.346
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.465
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.501
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.140
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.149
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.514
	CNS0095610	Silvery flower (tetraploid) 1	8.621
	CNS0095611	Silvery flower (tetraploid) 2	9.541
	CNS0095612	Silvery flower (tetraploid) 3	5.452
	CNS0095613	Golden flower (tetraploid) 1	5.700
	CNS0095614	Golden flower (tetraploid) 2	10.971
	CNS0095615	Golden flower (tetraploid) 3	4.900
CRA001975	CRR073297	Stem 1	12.068
	CRR073298	Stem 2	10.590
	CRR073299	Stem 3	9.324
	CRR073300	Leaf 1	10.905
	CRR073301	Leaf 2	9.935
	CRR073302	Leaf 3	8.240
	CRR073303	Juvenile bud 1	8.566
	CRR073304	Juvenile bud 2	4.978
	CRR073305	Juvenile bud 3	12.828
	CRR073306	Third green 1	1.946
	CRR073307	Third green 2	1.314
	CRR073308	Third green 3	2.186
	CRR073309	Second white 1	3.266
	CRR073310	Second white 2	2.381
	CRR073311	Second white 3	3.106
	CRR073312	Silver flowering 1	2.676
	CRR073313	Silver flowering 2	5.302
	CRR073314	Silver flowering 3	3.023
	CRR073315	Gold flowering 1	5.887
	CRR073316	Gold flowering 2	10.354
	CRR073317	Gold flowering 3	5.536
	CRR073318	Tawny withering 1	9.666
	CRR073319	Tawny withering 2	7.703
	CRR073320	Tawny withering 3	8.624