Gene detail

Detail information of GWHGAAZE014192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007018432.1	0	Growth-regulating factor 1 [Theobroma cacao]
Swissprot	tr\|Q6AWY3\|GRF6_ORYSJ	1E-102	Growth-regulating factor 6
trEMBL	tr\|A0A061FG66\|A0A061FG66_THECC	0	Growth-regulating factor 1 {ECO:0000313\|EMBL:EOY15657.1}
TAIR10	AT4G37740.1	3E-67	growth-regulating factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7536724	7539494	-
GWHAAZE00000004	mRNA	7536724	7539494	-
GWHAAZE00000004	exon	7539464	7539494	-
GWHAAZE00000004	exon	7539146	7539364	-
GWHAAZE00000004	exon	7538340	7538537	-
GWHAAZE00000004	exon	7537588	7537957	-
GWHAAZE00000004	exon	7536724	7537489	-
GWHAAZE00000004	CDS	7539464	7539494	-
GWHAAZE00000004	CDS	7539146	7539364	-
GWHAAZE00000004	CDS	7538340	7538537	-
GWHAAZE00000004	CDS	7537588	7537957	-
GWHAAZE00000004	CDS	7536724	7537489	-

Transcript Sequence
>GWHTAAZE014206 ATGGATTTTGGGGCTTTGCTGGGTTTTGAAGATGATGATGATGACTGCAAGAGGAGCAGGGACTTTAAGAAAGTGGACAAATTTGATGATTTATCAGCCATTCAGAAAACTTCTTTAATGAGATCTAATGGCCATCTTGCCTCTGATTCTCCTCAGATGCTCTGTTTCTCTCCACCTAACTCACAGGCTTCCACATTGCCTTACTATAACAACCACCCATCTAGTGCTTATGCTAGAAATACAGCCTCAGGTTATGGGTCAAGCATGCATGGGGTTAGAGGACCATTCACTCCATCACAATGGATGGAGCTAGAACACCAAGCATTGATCTACAAATACATTACTGCTAATGCACCTGTACCTCCTAATCTTCTCTTCCCAATCAGAAAAGCCCTTGAATCTGCTGGCTTTTCTTGCTTCCCTGGCAGCCATCTAAGACCCAATGCTTTGGGATGGGGTGCTTTCCATCTAGGATTTTCCAACACCGACCCTGAGCCGGGGAGATGTCGTCGGACCGATGGGAAGAAATGGCGGTGCTCAAGAGACGCGGTTGTTGACCAGAAGTATTGTGAACGGCACATGAACCGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAAGTGGCCAGTCCTCCGCCTCCAGACCACCCACCGCTGCCGCCAATAAGGTGTTGCCTCCTTCTTCCTCCACACCACCGCCAGCGGAGGTGCCCAGTGGCAGTGCATCAAATAGCCTCAGCCTCTCCCATCACCACCAGCAACTCAATAACTTGCATCCCGGTCCACGTCCTTCCGAATGCTCCAATCTTAGCAGGAGTTTTATGAACAAGGCAAATGGAGGTGAGAAAATACAAGAGACTAGTGGCCTCTCAATGATATCTCCCACCATTGGTCTAAAACGAGACCATTTCTCTATTCCGAAACAACCTAACCTTTATAAACCATCCTCTCAATCCGAATTCGGACTCGTTTGTTCTAACTCCCTGCTCAACCCTTTGCATAAAACCTATCAGGATCTCAACCGGGAAACCAAATCCCAGCATTCACTTCGTCAATTCATGGACGACTGGCCTAAAAACCAATCTGAAGGCTCGCCCGTTCAATGGCCAGATATGGACACGCAATCCGATAGAACACAACTCTCCATTTCGATCCCCGTGTCCTCTTCTTCAGACTTCAGGTCTTCAACTTCGTCACCCACAAATGAAAAACATCCTCCATCTCCTTTAAGGTTGTCTCATGAGATTGACTTAACTCAAATGAACCAAAAGCAAGCGAATTGGATTCCTATTTCTTGGGAAAATGCAATGGGCGGTCCGCTTGGGGAGGTCCTAAATAGCACTAATAACAGCAGTGTTGGGGACTATAAGAGCACCTCAGCCCTTAACCTTATGACGGAGGGATGGGATAATTGTCCTAGTATTGCATCATCACCAACTGGGGTCTTGCAAAAGACCACATTTAGGTCAGTTTCTAACAGCAGCGCTGGTAGTAGCCCGAGAACCGAAACGCACAAGGTACTCGAAGGAGCTAACTTTCTTGGCTCAAATCTGATCAGTTCTTCCTTTCCTGCATTATAA

Network for GWHGAAZE014192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08880.12	QLQ	95	129	6.80E-17
PF08879.11	WRC	164	206	4.70E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.537
	SRR3591706	second leaf	8.260
	SRR3591707	mature leaf	1.065
	SRR3591708	Shoot apex	18.378
	SRR3591709	Stem	1.186
	SRR3591710	White floral bud	3.202
	SRR3591711	White flower	6.531
	SRR3591712	Green floral bud	1.190
	SRR3591713	Yellow flower	0.304
SRP173429	SRR8316895	Juvenile bud stage	2.978
	SRR8316896	Juvenile bud stage	1.888
	SRR8316897	Juvenile bud stage	0.679
	SRR8316894	Third green stage	1.440
	SRR8316900	Third green stage	1.101
	SRR8316901	Third green stage	0.668
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	3.304
	SRR8316903	Complete white stage	1.320
	SRR8316902	Silver flowering stage	0.027
	SRR8316904	Silver flowering stage	0.244
	SRR8316905	Silver flowering stage	0.186
	SRR8316906	Gold flowering stage	0.460
	SRR8316907	Gold flowering stage	0.596
	SRR8316908	Gold flowering stage	0.559
SRP132670	SRR6706286	Control	1.320
	SRR6706287	Light intensity 50%	1.307
	SRR6706288	Light intensity 20%	1.269
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.691
	CNS0095593	Slightly white alabastrum(diploid) 2	2.221
	CNS0095594	Slightly white alabastrum(diploid) 3	2.149
	CNS0095595	Whole white alabastrum(diploid) 2	1.770
	CNS0095596	Whole white alabastrum(diploid) 3	0.435
	CNS0095597	Whole white alabastrum(diploid) 4	0.920
	CNS0095598	Silvery flower (diploied) 1	13.604
	CNS0095599	Silvery flower (diploied) 2	4.568
	CNS0095600	Silvery flower (diploied) 3	1.054
	CNS0095601	Golden flower (diploid) 1	6.772
	CNS0095602	Golden flower (diploid) 2	4.389
	CNS0095603	Golden flower (diploid) 3	4.876
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.928
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.210
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.070
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.443
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.934
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	2.406
	CNS0095612	Silvery flower (tetraploid) 3	0.966
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	8.725
	CRR073298	Stem 2	6.461
	CRR073299	Stem 3	7.212
	CRR073300	Leaf 1	0.817
	CRR073301	Leaf 2	1.322
	CRR073302	Leaf 3	0.968
	CRR073303	Juvenile bud 1	0.039
	CRR073304	Juvenile bud 2	0.024
	CRR073305	Juvenile bud 3	0.485
	CRR073306	Third green 1	0.122
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.134
	CRR073309	Second white 1	0.246
	CRR073310	Second white 2	0.075
	CRR073311	Second white 3	0.158
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.374
	CRR073316	Gold flowering 2	1.756
	CRR073317	Gold flowering 3	1.060
	CRR073318	Tawny withering 1	0.858
	CRR073319	Tawny withering 2	0.342
	CRR073320	Tawny withering 3	0.732