Gene detail

Detail information of GWHGAAZE014195

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI19359.3	1.5051E-177	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q6NKN9\|BH074_ARATH	1E-79	Transcription factor bHLH74
trEMBL	tr\|E0CNY1\|E0CNY1_VITVI	6E-178	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19359.3}
TAIR10	AT1G10120.1	3E-56	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7593256	7595187	+
GWHAAZE00000004	mRNA	7593256	7595187	+
GWHAAZE00000004	exon	7593256	7593783	+
GWHAAZE00000004	exon	7593872	7594093	+
GWHAAZE00000004	exon	7594185	7594250	+
GWHAAZE00000004	exon	7594325	7594393	+
GWHAAZE00000004	exon	7594706	7594777	+
GWHAAZE00000004	exon	7594869	7595012	+
GWHAAZE00000004	exon	7595098	7595187	+
GWHAAZE00000004	CDS	7593256	7593783	+
GWHAAZE00000004	CDS	7593872	7594093	+
GWHAAZE00000004	CDS	7594185	7594250	+
GWHAAZE00000004	CDS	7594325	7594393	+
GWHAAZE00000004	CDS	7594706	7594777	+
GWHAAZE00000004	CDS	7594869	7595012	+
GWHAAZE00000004	CDS	7595098	7595187	+

Transcript Sequence
>GWHTAAZE014209 ATGGGTACTGAAGATAATGGTGATATGGGATTTGCAAATAGAGTTGGTGATGGTATTATAAAGTGCCCTTCTTCAGTGATGAACACAAATGTGGCAATGAGCTCTGGTTCCATGTTTAAATCTTCAAATGGAGCAAACCCTTTCTTTGGCTCTGGTTGGGATCCACTTGTTTCACTGAGCCAGAGTGAGAATTTTGGTGGTTCTTCATCGATTCCTCACAATGAGTTCACCAATCCGCCTTACCCAGCCGTGCTAGAGAATCATCAAGCAATCAATAGCTTTTCCCATCTTGTTCATTACCAATCTGATTCGGGTCTTGGTGAAATGGTGCCAAAGCTTCCATTTTTGGGTAGTGGAAGGTTTTCAGAAATGGTGGGTTCCTTTGGCCTCTCTGACTGTGGCCAGATCACTAGTAATGCTTGTCCTCAAAATTATCCCCAAAACATCGAAAAGGCTTCGAAAAATGGCACAAATTCAGAGGAGGGAGGTTCACCCGGTGGAAAGAAGAAAAGAAGAGCGTCCGAGAAGAATGGTGAAGGAGAGGAACAAAAGAATACCTCTGAAGCGAGTTCAGAACAGGATGAAAAGAAGCAGAAAATTGAGCAACACGTAAGCCCAAATTTGCGCGGTAAGCAAACAGGTAAACAAACGAAAGATAATTCGGACAGTGGAGAGGGTCCTAAAGAAAACTACATCCATGTGAGGGCTAAACGAGGCCAAGCTACAAACAGTCATAGCCTTGCAGAAAGGGTGAGAAGAGAGAGGATTAGCGAGCGAATGAGACTACTACAAGAACTTGTTCCAGGATGCAATAAGATTACTGGAAAGGCTGTAATGCTTGATGAGATCATCAACTACGTGCAATCGCTACAACAGCAAGTTGAGTTTCTGTCAATGAAACTTGCTACAGTGAATCCGGAACTAAACGTCGATATGGAACGGATTTTGTCCAAAGATATTCTCCATTCTCGAGGTAGCAATGCTTCTGTTCTTGGGTTTGGTCCAGGATTGAGCTCACCCCATCCTTATTCCCAGGGAATTACACAGGGAAGCTTGCCCGGTATACCAAGTACAATTCCACCGTATCATCCTTTACCTCAGATTGTCTGGGACAATGAGCTTCAGACTCTTCTCCAAATGGGATTTGATTCTAGTCCTGCTGTTGAAAATATGGGACCAAACGGTGATTAA

Network for GWHGAAZE014195

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	243	291	3.50E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	125.273
	SRR3591706	second leaf	36.162
	SRR3591707	mature leaf	29.475
	SRR3591708	Shoot apex	58.538
	SRR3591709	Stem	91.079
	SRR3591710	White floral bud	36.625
	SRR3591711	White flower	26.382
	SRR3591712	Green floral bud	27.482
	SRR3591713	Yellow flower	4.590
SRP173429	SRR8316895	Juvenile bud stage	20.946
	SRR8316896	Juvenile bud stage	24.862
	SRR8316897	Juvenile bud stage	7.891
	SRR8316894	Third green stage	15.772
	SRR8316900	Third green stage	44.237
	SRR8316901	Third green stage	42.577
	SRR8316898	Complete white stage	26.366
	SRR8316899	Complete white stage	75.180
	SRR8316903	Complete white stage	39.522
	SRR8316902	Silver flowering stage	10.221
	SRR8316904	Silver flowering stage	12.412
	SRR8316905	Silver flowering stage	6.698
	SRR8316906	Gold flowering stage	10.164
	SRR8316907	Gold flowering stage	8.058
	SRR8316908	Gold flowering stage	5.797
SRP132670	SRR6706286	Control	19.474
	SRR6706287	Light intensity 50%	33.641
	SRR6706288	Light intensity 20%	31.036
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	24.139
	CNS0095593	Slightly white alabastrum(diploid) 2	45.584
	CNS0095594	Slightly white alabastrum(diploid) 3	21.456
	CNS0095595	Whole white alabastrum(diploid) 2	22.072
	CNS0095596	Whole white alabastrum(diploid) 3	16.378
	CNS0095597	Whole white alabastrum(diploid) 4	22.645
	CNS0095598	Silvery flower (diploied) 1	30.695
	CNS0095599	Silvery flower (diploied) 2	23.747
	CNS0095600	Silvery flower (diploied) 3	11.198
	CNS0095601	Golden flower (diploid) 1	16.941
	CNS0095602	Golden flower (diploid) 2	10.765
	CNS0095603	Golden flower (diploid) 3	10.494
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.808
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.491
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.991
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.510
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.692
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.964
	CNS0095610	Silvery flower (tetraploid) 1	23.121
	CNS0095611	Silvery flower (tetraploid) 2	9.908
	CNS0095612	Silvery flower (tetraploid) 3	7.424
	CNS0095613	Golden flower (tetraploid) 1	2.412
	CNS0095614	Golden flower (tetraploid) 2	8.122
	CNS0095615	Golden flower (tetraploid) 3	1.061
CRA001975	CRR073297	Stem 1	32.913
	CRR073298	Stem 2	31.853
	CRR073299	Stem 3	28.604
	CRR073300	Leaf 1	55.865
	CRR073301	Leaf 2	67.285
	CRR073302	Leaf 3	28.879
	CRR073303	Juvenile bud 1	41.583
	CRR073304	Juvenile bud 2	27.264
	CRR073305	Juvenile bud 3	72.867
	CRR073306	Third green 1	18.117
	CRR073307	Third green 2	24.880
	CRR073308	Third green 3	26.303
	CRR073309	Second white 1	1.196
	CRR073310	Second white 2	0.664
	CRR073311	Second white 3	0.140
	CRR073312	Silver flowering 1	0.340
	CRR073313	Silver flowering 2	0.309
	CRR073314	Silver flowering 3	0.050
	CRR073315	Gold flowering 1	9.268
	CRR073316	Gold flowering 2	11.573
	CRR073317	Gold flowering 3	7.303
	CRR073318	Tawny withering 1	42.271
	CRR073319	Tawny withering 2	39.359
	CRR073320	Tawny withering 3	52.098