Gene detail

Detail information of GWHGAAZE014199

Functional Annotation

Database	Orthologs	Annotation
Nr	AIK23028.1	squalene epoxidase 1 [Panax vietnamensis var. fuscidiscus]
Swissprot	tr\|O48651\|ERG1_PANGI	Squalene monooxygenase
trEMBL	tr\|A0A076VA95\|A0A076VA95_9APIA	Squalene epoxidase 1 {ECO:0000313\|EMBL:AIK23028.1}
TAIR10	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7681750	7684880	+
GWHAAZE00000004	mRNA	7681750	7684880	+
GWHAAZE00000004	exon	7681750	7681983	+
GWHAAZE00000004	exon	7682657	7682768	+
GWHAAZE00000004	exon	7682936	7683110	+
GWHAAZE00000004	exon	7683368	7683536	+
GWHAAZE00000004	exon	7683655	7683873	+
GWHAAZE00000004	exon	7683975	7684250	+
GWHAAZE00000004	exon	7684384	7684662	+
GWHAAZE00000004	exon	7684776	7684880	+
GWHAAZE00000004	CDS	7681750	7681983	+
GWHAAZE00000004	CDS	7682657	7682768	+
GWHAAZE00000004	CDS	7682936	7683110	+
GWHAAZE00000004	CDS	7683368	7683536	+
GWHAAZE00000004	CDS	7683655	7683873	+
GWHAAZE00000004	CDS	7683975	7684250	+
GWHAAZE00000004	CDS	7684384	7684662	+
GWHAAZE00000004	CDS	7684776	7684880	+

Transcript Sequence
>GWHTAAZE014213 ATGGTGGAGGATCAGTATGTGCTAGGTTCCATCTTGGCTTCCGTACTGTTGGGATCTGTTTCGGTCTACGCTTTTTTCTTACTCAATAATAATAAGAAAAATGGTTCGATAGACACAACCACAACCACCACGACCGCCATTAACGGAGAATGCAGAGCCAGAAATGACGACCCCGACGTCATCATAGTCGGTGCCGGTGTTGCTGGTGCGGCTCTCGCTCACACACTCGGCAAGGATGGACGTCGTGTACATGTGATTGAAAGAGACTTGACAGAGCCTGATAGAATTGTGGGAGAACTTCTACAACCCGGTGGCTACCTCAAATTGATTGAGTTGGGACTAGAAGACTGTGTACAGGAAATCGACGCCCAGCAGGTTTTCGGGTATGCCCTTTTCAAGAATGGAAAGAATACTCGACTCTCTTATCCTTTGGAAAAGTTCCACACGGATGTGTCTGGGAGGAGCTTTCACAATGGCAGATTCATCCAAAGAATGCGAGAGAAAGCTGCAACCCTTTCCAATGTTCAATTGGAGCAAGGAACAGTTACATCTCTGCTCGAAGAAAATGGTACCATTAAAGGTGTACAATACAAGTCCAAAAAAGGTGAAGAACTGGCAAAATATGCACCTCTGACCATTGTTTGTGATGGATGTTTTTCAAACTTGCGACGGTCTCTTTGCAATCCTCAGGTTGATGTGCCTTCATGCTTTGTCGGTTTACTCCTGGAGAACTGCAAACTTCCATATGAAAACCATGGTCATGTCATTTTAGCAGACCCATCGCCTGTCTTGTTTTATCGCATCAGTAGTACCGAGATTCGCTGTCTGGTTGATGTACCTGGTCAAAAAGTGCCCTCCATTTCTAATGGTGATTTGGCCAAATATTTGAAGACTGTGATTGCTCCTCAGATCCCTCCTGAGCTGCATGATTCCTTTATTGCAACAATTGATAGAGGAAACATAAGGACAATGCCCAATAGGAGCATGCCAGCTGCTCCTCACCCTACTCCAGGGGCTCTTCTGATGGGGGACGCATTTAACATGCGCCACCCCTTAACTGGTGGAGGAATGACTGTAGCACTGTCTGATATTGTTGTTCTACGCAATCTTCTTAGGCCTCTGAAAGACATGAATGATGCGGCTAATCTCTGCAAATATCTTGAATCATTTTACACCTTGCGTAAGCCTGTGGCTTCGACTATCAATACACTGGCTGGTGCACTGTACAAGGTGTTTTGTGCTTCACCTGATCAGGCAAGGAAAGAAATGAGAGAGGCGTGCTTCGACTACTTGAGCCTAGGAGGTGCATGCTCAGAGGGACCTGTCTCTTTGCTCTCTGGTTTGAACCCTAGGCCTTTGAGTTTGGTTGTCCATTTCTTTGCTGTGGCAATATTTGGTGTTGGCCGCTTGTTACTTCCTTTCCCCTCGCCCAAAAAAATATGGATTGGAGCTAGATTGATTTTGAGTGCATCAGGAATCATTTTCCCCATTATCAGAGCAGAAGGAGTTAGGCAAATGTTCTTCCCGGCAACTGTTCCTGCATATTACAGAGCTCCTCCAGCTAAATAA

Network for GWHGAAZE014199

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13450.7	NAD_binding_8	62	88	4.50E-05
PF08491.11	SE	209	481	6.90E-120

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00511	SQLE, ERG1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Steroid biosynthesis	map00100
		Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016021	cellular_component	integral component of membrane
GO:0004506	molecular_function	squalene monooxygenase activity
GO:0050660	molecular_function	flavin adenine dinucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.215
	SRR3591706	second leaf	7.238
	SRR3591707	mature leaf	1.746
	SRR3591708	Shoot apex	14.150
	SRR3591709	Stem	30.113
	SRR3591710	White floral bud	194.379
	SRR3591711	White flower	18.565
	SRR3591712	Green floral bud	173.534
	SRR3591713	Yellow flower	12.365
SRP173429	SRR8316895	Juvenile bud stage	27.698
	SRR8316896	Juvenile bud stage	70.666
	SRR8316897	Juvenile bud stage	26.167
	SRR8316894	Third green stage	28.567
	SRR8316900	Third green stage	119.420
	SRR8316901	Third green stage	114.583
	SRR8316898	Complete white stage	1.819
	SRR8316899	Complete white stage	8.183
	SRR8316903	Complete white stage	2.426
	SRR8316902	Silver flowering stage	3.115
	SRR8316904	Silver flowering stage	5.964
	SRR8316905	Silver flowering stage	1.810
	SRR8316906	Gold flowering stage	1.615
	SRR8316907	Gold flowering stage	2.779
	SRR8316908	Gold flowering stage	0.468
SRP132670	SRR6706286	Control	55.040
	SRR6706287	Light intensity 50%	60.323
	SRR6706288	Light intensity 20%	58.379
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	106.272
	CNS0095593	Slightly white alabastrum(diploid) 2	81.255
	CNS0095594	Slightly white alabastrum(diploid) 3	125.791
	CNS0095595	Whole white alabastrum(diploid) 2	220.461
	CNS0095596	Whole white alabastrum(diploid) 3	260.254
	CNS0095597	Whole white alabastrum(diploid) 4	310.157
	CNS0095598	Silvery flower (diploied) 1	15.104
	CNS0095599	Silvery flower (diploied) 2	37.895
	CNS0095600	Silvery flower (diploied) 3	7.565
	CNS0095601	Golden flower (diploid) 1	16.756
	CNS0095602	Golden flower (diploid) 2	9.056
	CNS0095603	Golden flower (diploid) 3	9.851
	CNS0095604	Slightly white alabastrum(tetraploid) 1	176.842
	CNS0095605	Slightly white alabastrum(tetraploid) 2	190.425
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.117
	CNS0095607	Whole white alabastrum(tetraploid) 1	320.864
	CNS0095608	Whole white alabastrum(tetraploid) 2	361.025
	CNS0095609	Whole white alabastrum(tetraploid) 3	169.297
	CNS0095610	Silvery flower (tetraploid) 1	4.207
	CNS0095611	Silvery flower (tetraploid) 2	20.309
	CNS0095612	Silvery flower (tetraploid) 3	46.096
	CNS0095613	Golden flower (tetraploid) 1	7.225
	CNS0095614	Golden flower (tetraploid) 2	1.875
	CNS0095615	Golden flower (tetraploid) 3	27.716
CRA001975	CRR073297	Stem 1	80.340
	CRR073298	Stem 2	73.298
	CRR073299	Stem 3	75.118
	CRR073300	Leaf 1	140.154
	CRR073301	Leaf 2	104.693
	CRR073302	Leaf 3	77.323
	CRR073303	Juvenile bud 1	122.266
	CRR073304	Juvenile bud 2	90.219
	CRR073305	Juvenile bud 3	27.133
	CRR073306	Third green 1	52.217
	CRR073307	Third green 2	61.133
	CRR073308	Third green 3	53.339
	CRR073309	Second white 1	1.753
	CRR073310	Second white 2	12.861
	CRR073311	Second white 3	12.976
	CRR073312	Silver flowering 1	57.653
	CRR073313	Silver flowering 2	48.992
	CRR073314	Silver flowering 3	32.073
	CRR073315	Gold flowering 1	65.262
	CRR073316	Gold flowering 2	23.433
	CRR073317	Gold flowering 3	12.468
	CRR073318	Tawny withering 1	75.450
	CRR073319	Tawny withering 2	67.422
	CRR073320	Tawny withering 3	75.896