Gene detail

Detail information of GWHGAAZE014206

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG27543.1	1.4701E-93	Homeobox-leucine zipper HAT22 -like protein [Gossypium arboreum]
Swissprot	tr\|P46604\|HAT22_ARATH	3E-81	Homeobox-leucine zipper protein HAT22
trEMBL	tr\|A5B626\|A5B626_VITVI	3E-92	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN60988.1}
TAIR10	AT4G37790.1	2E-48	Homeobox-leucine zipper protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7794443	7796426	+
GWHAAZE00000004	mRNA	7794443	7796426	+
GWHAAZE00000004	exon	7794443	7794925	+
GWHAAZE00000004	exon	7795107	7795186	+
GWHAAZE00000004	exon	7795431	7795769	+
GWHAAZE00000004	exon	7796420	7796426	+
GWHAAZE00000004	CDS	7794443	7794925	+
GWHAAZE00000004	CDS	7795107	7795186	+
GWHAAZE00000004	CDS	7795431	7795769	+
GWHAAZE00000004	CDS	7796420	7796426	+

Transcript Sequence
>GWHTAAZE014220 ATGGGTGTTGAGGATATTTGCAAAACTGGCTTAAGTCTTGGACTAGGCTCAATACTTGATAGCACACCAAAAAATCAACTTGAGTTAGATCATCACCAACAGAAGAAGAAATCATTGTCCAAGTCCGATCACTTGTTTTCATGTGATCTTACGTTAGCCTTATCCCCACAACTCATCAAGGAAGCCGCTCCAATGATTGATGCTGGTAATAAAGTTGTTGGTAAATCCGCCAATTTGAACCGACAAGCATCTTCGCTTAGTGTAGTATCTTCATTCTCAAATTCTAGTGTGAAGAGGGAGAGAGATATTATTGTCGAAGATGTAGAAGTAGAGAAAGTAGTAGGGTCTTCGTCGAAGGTTAGTAGTGATCACGATCAAGAAGATGATCATGAAGAGTTTGGGGCGAGAAAAAAGCTTAGGTTGACCAAAGATCAGTCCCTCCTTTTAGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCTAAGCAAAAAGAGGCGTTAGCAAAACAGCTAAATCTACGGCCACGACAAGTAGAAGTATGGTTTCAGAACAGGAGAGCCAGAACAAAGCTGAAGCAAACAGAAGTAGACTGTGACATGCTAAAGAAACGTTGTGAAATATTAACGGAGGAGAACAGAAGGCTGCACAAGGAGGTGCAAGACCTCAAAGCATTAAAAGGTACTGCTATAACAGCTGCTGCTCATGCACCATTTTATATGCAACTATCCGCGGCCACCTTTACTCTGTGTCCTTCATGTGAAAGGATCAGTGGTACTAATGCTGCTGCTGCTACTACTACTACTACTACTACATCTAGTAGCGTTACTGAAAGTTCATCCAAATCTCCTTTCTCTTCAAAGCCTCAGTTTTACACTACTTTCGCCCACCCATCTGCAGCTTCGAACTGA

Network for GWHGAAZE014206

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	136	190	2.30E-16
PF02183.19	HALZ	192	226	6.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.890
	SRR3591706	second leaf	1.221
	SRR3591707	mature leaf	6.218
	SRR3591708	Shoot apex	1.369
	SRR3591709	Stem	15.799
	SRR3591710	White floral bud	2.240
	SRR3591711	White flower	4.985
	SRR3591712	Green floral bud	0.196
	SRR3591713	Yellow flower	0.291
SRP173429	SRR8316895	Juvenile bud stage	0.308
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.047
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.013
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.311
	SRR8316903	Complete white stage	0.386
	SRR8316902	Silver flowering stage	2.849
	SRR8316904	Silver flowering stage	2.723
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.043
	SRR8316908	Gold flowering stage	0.221
SRP132670	SRR6706286	Control	0.085
	SRR6706287	Light intensity 50%	0.113
	SRR6706288	Light intensity 20%	0.138
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.328
	CNS0095593	Slightly white alabastrum(diploid) 2	0.098
	CNS0095594	Slightly white alabastrum(diploid) 3	0.076
	CNS0095595	Whole white alabastrum(diploid) 2	0.167
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.027
	CNS0095598	Silvery flower (diploied) 1	2.147
	CNS0095599	Silvery flower (diploied) 2	0.770
	CNS0095600	Silvery flower (diploied) 3	0.371
	CNS0095601	Golden flower (diploid) 1	0.263
	CNS0095602	Golden flower (diploid) 2	0.789
	CNS0095603	Golden flower (diploid) 3	0.547
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.201
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.432
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.160
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.225
	CNS0095610	Silvery flower (tetraploid) 1	3.627
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.947
	CNS0095614	Golden flower (tetraploid) 2	0.774
	CNS0095615	Golden flower (tetraploid) 3	0.356
CRA001975	CRR073297	Stem 1	0.240
	CRR073298	Stem 2	0.320
	CRR073299	Stem 3	0.185
	CRR073300	Leaf 1	0.088
	CRR073301	Leaf 2	0.048
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.055
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	1.234
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.249
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.770
	CRR073316	Gold flowering 2	1.678
	CRR073317	Gold flowering 3	1.894
	CRR073318	Tawny withering 1	1.122
	CRR073319	Tawny withering 2	1.166
	CRR073320	Tawny withering 3	1.893