Gene detail

Detail information of GWHGAAZE014207

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285521.1	1.7028E-144	PREDICTED: homeobox protein knotted-1-like 2 [Vitis vinifera]
Swissprot	tr\|O04135\|KNAP2_MALDO	2E-119	Homeobox protein knotted-1-like 2
trEMBL	tr\|F6H159\|F6H159_VITVI	6E-145	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45710.1}
TAIR10	AT4G08150.1	3E-75	KNOTTED-like from Arabidopsis thaliana

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7805204	7811299	-
GWHAAZE00000004	mRNA	7805204	7811299	-
GWHAAZE00000004	exon	7810884	7811299	-
GWHAAZE00000004	exon	7810320	7810432	-
GWHAAZE00000004	exon	7805947	7806200	-
GWHAAZE00000004	exon	7805204	7805407	-
GWHAAZE00000004	CDS	7810884	7811299	-
GWHAAZE00000004	CDS	7810320	7810432	-
GWHAAZE00000004	CDS	7805947	7806200	-
GWHAAZE00000004	CDS	7805204	7805407	-

Transcript Sequence
>GWHTAAZE014221 ATGGAGGATTACAATCAACAACTGAGCGACAACGTAGCTACTGCCTCGAGGGGGGGTAGTACTAGTTTCTTGTACGGAAGCCCAGTTCTTGCTAATCCTACTTCTTCTTCAGTTTATGCTAGAACCACTTCTTCTTCTGATACTCATCATCATCAAATCAACAACTTCCATATCCAATCTAACGACTGTTTTCAATCAGAAGCACAGCCTCATCCGATCGTCAAGATCGAAATGGGGAGTTCACAACATCCCCATAAATTCCATTACCCTTCCATAATTAGGGGGCATCAAGGAATGAATCATCATCAACAAGCAGCTGCTGCTGCTGATCAACAAAGACAGGATAGTAATAATAATATTAATGAGAGCTCTAATGAAGATGAAGCTATGAAAGCAAAGATCATCGCTCATCCTCAAGATGAGTTAACGAGGCCATTACAAGAGGCTATGGAGTACATGAGAAGGATCGAAGCTCAGCTAAATATGCTCACCACCACCGGTGCTGCTCCACTCCGTGTCTTCACCTCGGATGAGAAGTGCGAGGGTATTGGTTCATCTGAGGAGGATCAAGACAATAGCGGTGGAGAAACAGAACTTCCAGAGATAGATCCGCGTGCTGAAGACAGGGAACTGAAGAACCACCTGTTGAGGAAGTATAGTGGTTACTTGAGTAGTCTTAAGCAAGAACTCTCCAAGAAAAAGAAGAAAGGCAAACTACCCAAAGATGCTCGCCAGAAGCTACTCAACTGGTGGGAGTTACACTACAAATGGCCATATCCTTCGGAGACAGAGAAGGTGGCATTGGCTGAATCAACAGGTTTGGACCAGAAGCAAATTAACAATTGGTTCATAAACCAAAGGAAACGACACTGGAAACCGTCGGAGGACATGCAATTTATGGTGATGGATGGTCTCCACCCACAGAATGCAGCTCTCTATATGGAAGGTCACTATATGGGTGAAGGTCCTTATCGTTTGGGCCCCTGA

Network for GWHGAAZE014207

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03791.14	KNOX2	140	164	3.70E-07
PF03789.14	ELK	210	231	1.20E-10
PF05920.12	Homeobox_KN	250	289	1.00E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	166.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	64.982
	SRR3591709	Stem	204.102
	SRR3591710	White floral bud	3.912
	SRR3591711	White flower	5.732
	SRR3591712	Green floral bud	0.427
	SRR3591713	Yellow flower	0.395
SRP173429	SRR8316895	Juvenile bud stage	1.283
	SRR8316896	Juvenile bud stage	0.295
	SRR8316897	Juvenile bud stage	0.064
	SRR8316894	Third green stage	0.853
	SRR8316900	Third green stage	0.167
	SRR8316901	Third green stage	0.167
	SRR8316898	Complete white stage	0.191
	SRR8316899	Complete white stage	4.233
	SRR8316903	Complete white stage	1.844
	SRR8316902	Silver flowering stage	0.084
	SRR8316904	Silver flowering stage	0.220
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.006
	SRR8316907	Gold flowering stage	0.619
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.881
	SRR6706287	Light intensity 50%	1.564
	SRR6706288	Light intensity 20%	1.341
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.051
	CNS0095593	Slightly white alabastrum(diploid) 2	5.252
	CNS0095594	Slightly white alabastrum(diploid) 3	1.828
	CNS0095595	Whole white alabastrum(diploid) 2	6.841
	CNS0095596	Whole white alabastrum(diploid) 3	0.014
	CNS0095597	Whole white alabastrum(diploid) 4	4.306
	CNS0095598	Silvery flower (diploied) 1	12.278
	CNS0095599	Silvery flower (diploied) 2	12.257
	CNS0095600	Silvery flower (diploied) 3	3.755
	CNS0095601	Golden flower (diploid) 1	20.023
	CNS0095602	Golden flower (diploid) 2	7.173
	CNS0095603	Golden flower (diploid) 3	8.672
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.465
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.790
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.932
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.257
	CNS0095611	Silvery flower (tetraploid) 2	1.549
	CNS0095612	Silvery flower (tetraploid) 3	0.495
	CNS0095613	Golden flower (tetraploid) 1	0.737
	CNS0095614	Golden flower (tetraploid) 2	0.817
	CNS0095615	Golden flower (tetraploid) 3	0.070
CRA001975	CRR073297	Stem 1	0.236
	CRR073298	Stem 2	0.353
	CRR073299	Stem 3	0.523
	CRR073300	Leaf 1	0.495
	CRR073301	Leaf 2	0.751
	CRR073302	Leaf 3	0.444
	CRR073303	Juvenile bud 1	0.378
	CRR073304	Juvenile bud 2	0.402
	CRR073305	Juvenile bud 3	2.214
	CRR073306	Third green 1	0.169
	CRR073307	Third green 2	0.207
	CRR073308	Third green 3	0.449
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.014
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.041
	CRR073318	Tawny withering 1	147.118
	CRR073319	Tawny withering 2	114.044
	CRR073320	Tawny withering 3	178.900