Gene detail

Detail information of GWHGAAZE014214

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009790132.1	PREDICTED: xylulose kinase-like isoform X1 [Nicotiana sylvestris]
trEMBL	tr\|A0A061FE36\|A0A061FE36_THECC	Xylulose kinase, putative {ECO:0000313\|EMBL:EOY15595.1}
TAIR10	AT5G49650.1	xylulose kinase-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7944833	7948391	+
GWHAAZE00000004	mRNA	7944833	7948391	+
GWHAAZE00000004	exon	7944833	7944891	+
GWHAAZE00000004	exon	7945289	7945943	+
GWHAAZE00000004	exon	7946031	7946119	+
GWHAAZE00000004	exon	7946214	7946278	+
GWHAAZE00000004	exon	7946413	7946468	+
GWHAAZE00000004	exon	7946802	7946922	+
GWHAAZE00000004	exon	7947034	7947108	+
GWHAAZE00000004	exon	7947218	7947271	+
GWHAAZE00000004	exon	7947548	7947642	+
GWHAAZE00000004	exon	7947759	7947933	+
GWHAAZE00000004	exon	7948159	7948391	+
GWHAAZE00000004	CDS	7944833	7944891	+
GWHAAZE00000004	CDS	7945289	7945943	+
GWHAAZE00000004	CDS	7946031	7946119	+
GWHAAZE00000004	CDS	7946214	7946278	+
GWHAAZE00000004	CDS	7946413	7946468	+
GWHAAZE00000004	CDS	7946802	7946922	+
GWHAAZE00000004	CDS	7947034	7947108	+
GWHAAZE00000004	CDS	7947218	7947271	+
GWHAAZE00000004	CDS	7947548	7947642	+
GWHAAZE00000004	CDS	7947759	7947933	+
GWHAAZE00000004	CDS	7948159	7948391	+

Transcript Sequence
>GWHTAAZE014228 ATGGAGGATTTCTCTCTTCCTCAGGACTCCCTTTTCCTTGGATTTGATAGCTCTACTCAGTCACTGAAGGCAACTGTTTTAGATGCCAATCTTAAGATTGTTACATCAGAAATTGTAAACTTTGATTCCGAATTGCCCCATTACAAAACCAAAGATGGTGTTTACCGAGACCCATCCGTTAATGGCCGGATCGTTTCACCCACTCTTATGTGGGTGGAAGCATTGGATCTCATATTGCAGAGACTTGAAAAATCAAATTTTGATTTCGGAACAATAGCTGCTGTTTCGGGCAGTGGACAGCAACATGGTAGTGTATATTGGAAATATGGAAGTTCTTTAAAGCTATCATCGTTGGACCCAAAGAAACCTTTGGTGGATCAACTTAGCGATGCATTTTCAACCAAAGAATCGCCCATATGGATGGACAGCAGCACCACAGAACAGTGTAAAGCAATCGAAAAGGCCGTTGGAGGTGCAGTTGAGTTAGCTAAACTTACTGGGTCTCGTGCGCATGAGAGATACACTGGACCCCAAATTAGGAGGATATTTGAAAAAAACCCCGAAGTTTATCGAAATACAGAGAGGATCTCCTTAGTTAGCTCGTTCATGGGTTCCCTTTTTATTGGCGACTATGCTTGTATTGATCAAACTGATGGAGCAGGGATGAACTTGATGGATATTGAGCATAGAACTTGGTCTAAAATAGCTTTGGAGGCCACAGCAATAGGTTTGGAGGATAAACTTGGAGAGTTAGCTCCTGCACATGCTGTTTCTGGTTTCATTTCTCCCTATTTTGTGGAGAGGTTTGGCTTCAAGAAGAACTGTTTGGTTGTTCATTGGACTGGAGACAATCCTAACAGCCTAGCAGGGTTGACTCTAAATAGTCCAGGTGATCTGGCAATTAGTCTTGGCACTAGTGACACTGTCTTTGGGATAAGCACTAGACATCAACCAAGCTTAGACGGGCATGTTTTTCCTAATCCGGTGGATACAAAAAGCTACATGGTAATGTTGGTATATAAGAATGGCTCTCTTACTCGTGAAGATATACGTAATAGATACGCGGATAAATCGTGGGAGGTATTCAATACATTTCTGCAGCAAACGCCACCTCTAAATGGGGGGAAGATAGGTTTTTACTACAAGGAGCACGAAATACTTCCTCCCCTTCCAGCTGGTTTTCACCGTTACATCATTGATAATTTTGAGGGAGAAGCTATAGGCGGTCCAAGTGAACGTGAAGTGAAGGAATTTGATCCTCCTTCCGAGGTTCGAGCATTAATTGAGGGCCAATTAATTTCCATGCGAGCTCATTCAGAAAGATTTGGGATGCCTTCTCCGCCAAATCGGATAATAGCTACGGGTGGAGCATCAACAAATAACAGCATCCTAAGCTCAATAGCTTCCATTTTCGGATGTAATATCTACACGGTCCAAAGACCAGACTCGGCTTCCTTGGGAGCTGCATTGAGAGCGGCTCATGGTTGGTTGTGCAAAAAGAAGGGAAGTTTTGTGCCTATATCGTACATGTACATGAACAAGTTGGATAAGACCTCACTTGGCTGCAAGCTTGCTGCTAATGCAGGAGATGAAGAAATTGTTGGAAAGTATTCTTTGTTAATGAAGAAGAGGATGGATATTGAGGAGCGGCTTGTCCAAAGGCTGGGCCGTTTGTAG

Network for GWHGAAZE014214

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00370.22	FGGY_N	139	288	2.20E-15
PF02782.17	FGGY_C	300	495	4.40E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00854	xylB, XYLB	Metabolic pathways	map01100
K00854	xylB, XYLB	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0042732	biological_process	D-xylose metabolic process
GO:0016773	molecular_function	phosphotransferase activity, alcohol group as acceptor
GO:0004856	molecular_function	xylulokinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.245
	SRR3591706	second leaf	9.871
	SRR3591707	mature leaf	14.967
	SRR3591708	Shoot apex	16.756
	SRR3591709	Stem	20.646
	SRR3591710	White floral bud	10.491
	SRR3591711	White flower	15.581
	SRR3591712	Green floral bud	10.830
	SRR3591713	Yellow flower	9.178
SRP173429	SRR8316895	Juvenile bud stage	4.905
	SRR8316896	Juvenile bud stage	7.101
	SRR8316897	Juvenile bud stage	2.611
	SRR8316894	Third green stage	4.422
	SRR8316900	Third green stage	9.009
	SRR8316901	Third green stage	10.218
	SRR8316898	Complete white stage	2.291
	SRR8316899	Complete white stage	12.856
	SRR8316903	Complete white stage	3.883
	SRR8316902	Silver flowering stage	2.189
	SRR8316904	Silver flowering stage	3.413
	SRR8316905	Silver flowering stage	1.299
	SRR8316906	Gold flowering stage	3.444
	SRR8316907	Gold flowering stage	3.845
	SRR8316908	Gold flowering stage	4.531
SRP132670	SRR6706286	Control	7.197
	SRR6706287	Light intensity 50%	8.186
	SRR6706288	Light intensity 20%	8.444
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.940
	CNS0095593	Slightly white alabastrum(diploid) 2	6.913
	CNS0095594	Slightly white alabastrum(diploid) 3	4.420
	CNS0095595	Whole white alabastrum(diploid) 2	5.967
	CNS0095596	Whole white alabastrum(diploid) 3	4.759
	CNS0095597	Whole white alabastrum(diploid) 4	4.195
	CNS0095598	Silvery flower (diploied) 1	12.529
	CNS0095599	Silvery flower (diploied) 2	5.155
	CNS0095600	Silvery flower (diploied) 3	4.821
	CNS0095601	Golden flower (diploid) 1	9.359
	CNS0095602	Golden flower (diploid) 2	5.110
	CNS0095603	Golden flower (diploid) 3	4.680
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.998
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.942
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.646
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.486
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.037
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.857
	CNS0095610	Silvery flower (tetraploid) 1	7.240
	CNS0095611	Silvery flower (tetraploid) 2	5.565
	CNS0095612	Silvery flower (tetraploid) 3	2.284
	CNS0095613	Golden flower (tetraploid) 1	2.867
	CNS0095614	Golden flower (tetraploid) 2	7.286
	CNS0095615	Golden flower (tetraploid) 3	2.602
CRA001975	CRR073297	Stem 1	7.508
	CRR073298	Stem 2	7.829
	CRR073299	Stem 3	3.674
	CRR073300	Leaf 1	8.972
	CRR073301	Leaf 2	9.931
	CRR073302	Leaf 3	4.981
	CRR073303	Juvenile bud 1	4.485
	CRR073304	Juvenile bud 2	1.600
	CRR073305	Juvenile bud 3	3.909
	CRR073306	Third green 1	0.313
	CRR073307	Third green 2	0.044
	CRR073308	Third green 3	0.346
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.253
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.139
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.177
	CRR073316	Gold flowering 2	2.097
	CRR073317	Gold flowering 3	0.675
	CRR073318	Tawny withering 1	3.726
	CRR073319	Tawny withering 2	7.254
	CRR073320	Tawny withering 3	5.267