Gene detail

Detail information of GWHGAAZE014221

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283625.1	0	PREDICTED: probable beta-1,4-xylosyltransferase IRX9H [Vitis vinifera]
Swissprot	tr\|Q9SXC4\|IRX9H_ARATH	9E-178	Probable beta-1,4-xylosyltransferase IRX9H
trEMBL	tr\|F6GZL7\|F6GZL7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45696.1}
TAIR10	AT1G27600.2	7E-131	Nucleotide-diphospho-sugar transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	8161799	8165738	+
GWHAAZE00000004	mRNA	8161799	8165738	+
GWHAAZE00000004	exon	8161799	8162613	+
GWHAAZE00000004	exon	8164767	8165016	+
GWHAAZE00000004	exon	8165192	8165411	+
GWHAAZE00000004	exon	8165647	8165738	+
GWHAAZE00000004	CDS	8161799	8162613	+
GWHAAZE00000004	CDS	8164767	8165016	+
GWHAAZE00000004	CDS	8165192	8165365	+
GWHAAZE00000004	three_prime_UTR	8165366	8165411	+
GWHAAZE00000004	three_prime_UTR	8165647	8165738	+

Transcript Sequence
>GWHTAAZE014235 ATGGCTTCGATTCGAAGAACTCTATCGCCGTATCACGACCGCCCGTATCAGAATGGAGGAAGTCCATTTTCAGTCCATTCTCCATCTCATAAGCTCAATTCCAGCTCTAAATACTCATCCTCATTGTCCAATTTTGGAATTGGACTCCGCAGATTTCTGGTCGGAGTTTTACTGCCTAATAAATCCTCTCGGAAAGGTTCCCACACATGGAAAAGATCTTTTTATAGGTGTTTGTTGTTCTTCTTGCTAGGGTTTTTGTTAGGTATGGCTCCGTTTGGTAACGTAGAGGATTTTGGAAGTCACGATTTTTCCTTCGAGATTAAGAGGAAGCCAGTAAATGTTGAAGAGGACGTTAAAGATGTAGTTGTTGCTAGACCGGATGATGATCTCGTAGTGAATTCAGTGGAATTCGGTGTTGGTGTTGATAAGAAGAGATCCGATATGAATGTACGATTTGATTTCATGCCTAGGAAGCAGTTAATTGTTGTGACGCCAACATATGTTCGCACCCTCCAAGCTTTTTACTTGAATAGATTGGGGCAGCTGCTTCGGCTAGTCCCTCCGCCGGTTATTTGGATTGTGGTGGAGATGGATACAGCTTCGATGGAAACTGCAGAAATATTGAGGAAAACTGGTGCTATGTATAGGCACTTAGTGTGTACCAAGAACTCTACAAATACAAAGGATAGAGGAGTTCACCAACGGAACACTGCCCTTGAGCACATTGAGCATCATAAGCTCAATGGGATAGTTTACTTCGCAGATGACGATAACATCTATTCACTCGAGTTGTTTGAGAGAATTAGAGAAATCAGCCGGTTTGGCACCTGGCCAGTTGCCATGCTAGCACAAAGCAAAGCCAAGGCAATATTGGAAGGTCCAGTATGCAAAGGAAGTCAAGTAATTGGATGGAACACAAATGAGAAGAGTAAAAAACTCCGTAGATTTCACGTTGATATGTCAGGCTTTGCATTCAACAGCACCATATTGTGGGACCGAAAGAGATGGCATCGACCCACCTCAGATCCAATCCGACAGTTGGACAGTGTGAAGGAGGGTTTCCAAGAGACCACATTTATAGAACAAGTGGTGGAAGATGAAAGCCAAATGGAAGGTACACCAGCAGATTGTTCAAGGATCATGAATTGGCATCTCCATTTGGAAGCTCATGAACTACTTGTTTATCCTAGAGGCTGGCTGCTCCAAAATAATCTTGATGTTGTTCTCCCGATCAAGTGATTAAACTCCCAATCCCGTGACCTTCTACATCAAGAGCCCAAAAGAGTTTTGGTTGATCAGATTATGGCAGTCCTTAATTCATGAGCATACCATTCTTTGCAAGCTGCGATCACAAGCAGAGGCAGCTCAGACAGTTTG

Network for GWHGAAZE014221

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0261

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03360.17	Glyco_transf_43	179	388	5.30E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	cellular_component	membrane
GO:0015018	molecular_function	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.926
	SRR3591706	second leaf	7.914
	SRR3591707	mature leaf	8.287
	SRR3591708	Shoot apex	10.961
	SRR3591709	Stem	35.169
	SRR3591710	White floral bud	13.059
	SRR3591711	White flower	13.290
	SRR3591712	Green floral bud	17.024
	SRR3591713	Yellow flower	8.620
SRP173429	SRR8316895	Juvenile bud stage	12.355
	SRR8316896	Juvenile bud stage	13.255
	SRR8316897	Juvenile bud stage	8.167
	SRR8316894	Third green stage	5.317
	SRR8316900	Third green stage	13.001
	SRR8316901	Third green stage	13.608
	SRR8316898	Complete white stage	6.225
	SRR8316899	Complete white stage	21.076
	SRR8316903	Complete white stage	9.739
	SRR8316902	Silver flowering stage	4.699
	SRR8316904	Silver flowering stage	7.519
	SRR8316905	Silver flowering stage	2.608
	SRR8316906	Gold flowering stage	7.794
	SRR8316907	Gold flowering stage	6.895
	SRR8316908	Gold flowering stage	9.289
SRP132670	SRR6706286	Control	10.684
	SRR6706287	Light intensity 50%	11.342
	SRR6706288	Light intensity 20%	11.433
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.149
	CNS0095593	Slightly white alabastrum(diploid) 2	12.071
	CNS0095594	Slightly white alabastrum(diploid) 3	9.158
	CNS0095595	Whole white alabastrum(diploid) 2	10.060
	CNS0095596	Whole white alabastrum(diploid) 3	8.048
	CNS0095597	Whole white alabastrum(diploid) 4	6.826
	CNS0095598	Silvery flower (diploied) 1	9.322
	CNS0095599	Silvery flower (diploied) 2	12.982
	CNS0095600	Silvery flower (diploied) 3	14.945
	CNS0095601	Golden flower (diploid) 1	10.331
	CNS0095602	Golden flower (diploid) 2	14.940
	CNS0095603	Golden flower (diploid) 3	14.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.299
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.928
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.312
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.361
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.895
	CNS0095610	Silvery flower (tetraploid) 1	10.028
	CNS0095611	Silvery flower (tetraploid) 2	7.220
	CNS0095612	Silvery flower (tetraploid) 3	9.673
	CNS0095613	Golden flower (tetraploid) 1	5.076
	CNS0095614	Golden flower (tetraploid) 2	7.673
	CNS0095615	Golden flower (tetraploid) 3	5.927
CRA001975	CRR073297	Stem 1	12.287
	CRR073298	Stem 2	10.255
	CRR073299	Stem 3	9.772
	CRR073300	Leaf 1	12.592
	CRR073301	Leaf 2	12.781
	CRR073302	Leaf 3	12.357
	CRR073303	Juvenile bud 1	14.308
	CRR073304	Juvenile bud 2	8.965
	CRR073305	Juvenile bud 3	17.228
	CRR073306	Third green 1	12.321
	CRR073307	Third green 2	15.900
	CRR073308	Third green 3	12.444
	CRR073309	Second white 1	7.331
	CRR073310	Second white 2	5.768
	CRR073311	Second white 3	4.725
	CRR073312	Silver flowering 1	6.078
	CRR073313	Silver flowering 2	6.651
	CRR073314	Silver flowering 3	4.859
	CRR073315	Gold flowering 1	14.976
	CRR073316	Gold flowering 2	21.976
	CRR073317	Gold flowering 3	12.262
	CRR073318	Tawny withering 1	23.134
	CRR073319	Tawny withering 2	33.870
	CRR073320	Tawny withering 3	35.476