Detail information of GWHGAAZE014226


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009603349.10PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Nicotiana tomentosiformis]
Swissprottr|P93111|HEM11_CUCSA0Glutamyl-tRNA reductase 1, chloroplastic (Precursor)
trEMBLtr|A6Q0F0|A6Q0F0_TOBAC0Glutamyl-tRNA reductase {ECO:0000256|RuleBase:RU000584} (Fragment)
TAIR10AT1G58290.10Glutamyl-tRNA reductase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene82453018248066+
GWHAAZE00000004mRNA82453018248066+
GWHAAZE00000004exon82453018245499+
GWHAAZE00000004exon82465588246799+
GWHAAZE00000004exon82469368248066+
GWHAAZE00000004CDS82453018245499+
GWHAAZE00000004CDS82465588246799+
GWHAAZE00000004CDS82469368248066+
Transcript Sequence

Network for GWHGAAZE014226

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05201.16GlutR_N782284.80E-40
PF01488.21Shikimate_DH2443851.30E-42
PF00745.21GlutR_dimer3995032.50E-28
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02492hemA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0033014biological_processtetrapyrrole biosynthetic process
GO:0055114biological_processoxidation-reduction process
GO:0008883molecular_functionglutamyl-tRNA reductase activity
GO:0050661molecular_functionNADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf278.521
SRR3591706second leaf687.080
SRR3591707mature leaf313.472
SRR3591708Shoot apex290.733
SRR3591709Stem217.549
SRR3591710White floral bud29.392
SRR3591711White flower51.927
SRR3591712Green floral bud35.588
SRR3591713Yellow flower41.785
SRP173429 SRR8316895Juvenile bud stage 58.159
SRR8316896Juvenile bud stage 65.902
SRR8316897Juvenile bud stage 37.067
SRR8316894Third green stage 25.917
SRR8316900Third green stage 57.988
SRR8316901Third green stage 60.450
SRR8316898Complete white stage 9.960
SRR8316899Complete white stage 53.708
SRR8316903Complete white stage 19.270
SRR8316902Silver flowering stage10.312
SRR8316904Silver flowering stage16.543
SRR8316905Silver flowering stage7.477
SRR8316906Gold flowering stage 26.263
SRR8316907Gold flowering stage 18.776
SRR8316908Gold flowering stage 23.096
SRP132670SRR6706286Control77.903
SRR6706287Light intensity 50%66.424
SRR6706288Light intensity 20%67.944
CNP0000432CNS0095592Slightly white alabastrum(diploid) 140.586
CNS0095593Slightly white alabastrum(diploid) 249.824
CNS0095594Slightly white alabastrum(diploid) 338.773
CNS0095595Whole white alabastrum(diploid) 249.615
CNS0095596Whole white alabastrum(diploid) 339.811
CNS0095597Whole white alabastrum(diploid) 438.957
CNS0095598Silvery flower (diploied) 1102.752
CNS0095599Silvery flower (diploied) 2130.381
CNS0095600Silvery flower (diploied) 391.457
CNS0095601Golden flower (diploid) 1102.853
CNS0095602Golden flower (diploid) 2146.147
CNS0095603Golden flower (diploid) 3141.406
CNS0095604Slightly white alabastrum(tetraploid) 147.545
CNS0095605Slightly white alabastrum(tetraploid) 243.004
CNS0095606Slightly white alabastrum(tetraploid) 384.321
CNS0095607Whole white alabastrum(tetraploid) 147.761
CNS0095608Whole white alabastrum(tetraploid) 233.389
CNS0095609Whole white alabastrum(tetraploid) 347.793
CNS0095610Silvery flower (tetraploid) 1101.050
CNS0095611Silvery flower (tetraploid) 2142.401
CNS0095612Silvery flower (tetraploid) 311.321
CNS0095613Golden flower (tetraploid) 131.820
CNS0095614Golden flower (tetraploid) 296.803
CNS0095615Golden flower (tetraploid) 331.559
CRA001975CRR073297Stem 156.552
CRR073298Stem 255.427
CRR073299Stem 358.714
CRR073300Leaf 144.123
CRR073301Leaf 243.333
CRR073302Leaf 341.883
CRR073303Juvenile bud 138.536
CRR073304Juvenile bud 224.678
CRR073305Juvenile bud 373.036
CRR073306Third green 18.240
CRR073307Third green 27.351
CRR073308Third green 311.830
CRR073309Second white 15.252
CRR073310Second white 23.575
CRR073311Second white 33.355
CRR073312Silver flowering 15.628
CRR073313Silver flowering 25.737
CRR073314Silver flowering 36.532
CRR073315Gold flowering 167.038
CRR073316Gold flowering 279.002
CRR073317Gold flowering 397.900
CRR073318Tawny withering 137.558
CRR073319Tawny withering 225.346
CRR073320Tawny withering 330.769