Detail information of GWHGAAZE014232


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009765987.10PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Nicotiana sylvestris]
Swissprottr|P34899|GLYM_PEA0Serine hydroxymethyltransferase, mitochondrial (Precursor)
trEMBLtr|M1A7K0|M1A7K0_SOLTU0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}
TAIR10AT5G26780.10serine hydroxymethyltransferase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene83681448375895-
GWHAAZE00000004mRNA83681448375895-
GWHAAZE00000004exon83758008375895-
GWHAAZE00000004exon83756268375673-
GWHAAZE00000004exon83754348375520-
GWHAAZE00000004exon83741898374310-
GWHAAZE00000004exon83739358374011-
GWHAAZE00000004exon83735728373696-
GWHAAZE00000004exon83728548372946-
GWHAAZE00000004exon83705658370657-
GWHAAZE00000004exon83702618370458-
GWHAAZE00000004exon83699638370067-
GWHAAZE00000004exon83697828369847-
GWHAAZE00000004exon83695538369630-
GWHAAZE00000004exon83690688369179-
GWHAAZE00000004exon83688678368977-
GWHAAZE00000004exon83683868368525-
GWHAAZE00000004exon83681448368230-
GWHAAZE00000004CDS83758008375895-
GWHAAZE00000004CDS83756268375673-
GWHAAZE00000004CDS83754348375520-
GWHAAZE00000004CDS83741898374310-
GWHAAZE00000004CDS83739358374011-
GWHAAZE00000004CDS83735728373696-
GWHAAZE00000004CDS83728548372946-
GWHAAZE00000004CDS83705658370657-
GWHAAZE00000004CDS83702618370458-
GWHAAZE00000004CDS83699638370067-
GWHAAZE00000004CDS83697828369847-
GWHAAZE00000004CDS83695538369630-
GWHAAZE00000004CDS83690688369179-
GWHAAZE00000004CDS83688678368977-
GWHAAZE00000004CDS83683868368525-
GWHAAZE00000004CDS83681448368230-
Transcript Sequence

Network for GWHGAAZE014232

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.20SHMT574542.70E-212
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0019264biological_processglycine biosynthetic process from serine
GO:0035999biological_processtetrahydrofolate interconversion
GO:0003824molecular_functioncatalytic activity
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0004372molecular_functionglycine hydroxymethyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf156.340
SRR3591706second leaf65.704
SRR3591707mature leaf43.051
SRR3591708Shoot apex104.522
SRR3591709Stem267.794
SRR3591710White floral bud75.108
SRR3591711White flower91.124
SRR3591712Green floral bud88.111
SRR3591713Yellow flower83.878
SRP173429 SRR8316895Juvenile bud stage 74.045
SRR8316896Juvenile bud stage 99.934
SRR8316897Juvenile bud stage 47.352
SRR8316894Third green stage 43.343
SRR8316900Third green stage 133.097
SRR8316901Third green stage 131.357
SRR8316898Complete white stage 54.412
SRR8316899Complete white stage 103.053
SRR8316903Complete white stage 79.439
SRR8316902Silver flowering stage48.525
SRR8316904Silver flowering stage74.808
SRR8316905Silver flowering stage38.717
SRR8316906Gold flowering stage 122.697
SRR8316907Gold flowering stage 115.500
SRR8316908Gold flowering stage 169.038
SRP132670SRR6706286Control129.314
SRR6706287Light intensity 50%136.408
SRR6706288Light intensity 20%138.438
CNP0000432CNS0095592Slightly white alabastrum(diploid) 171.646
CNS0095593Slightly white alabastrum(diploid) 274.319
CNS0095594Slightly white alabastrum(diploid) 365.709
CNS0095595Whole white alabastrum(diploid) 276.475
CNS0095596Whole white alabastrum(diploid) 388.954
CNS0095597Whole white alabastrum(diploid) 470.933
CNS0095598Silvery flower (diploied) 166.840
CNS0095599Silvery flower (diploied) 265.590
CNS0095600Silvery flower (diploied) 396.633
CNS0095601Golden flower (diploid) 156.093
CNS0095602Golden flower (diploid) 285.190
CNS0095603Golden flower (diploid) 386.930
CNS0095604Slightly white alabastrum(tetraploid) 186.533
CNS0095605Slightly white alabastrum(tetraploid) 276.596
CNS0095606Slightly white alabastrum(tetraploid) 3114.041
CNS0095607Whole white alabastrum(tetraploid) 161.316
CNS0095608Whole white alabastrum(tetraploid) 253.547
CNS0095609Whole white alabastrum(tetraploid) 3101.854
CNS0095610Silvery flower (tetraploid) 1121.316
CNS0095611Silvery flower (tetraploid) 299.372
CNS0095612Silvery flower (tetraploid) 3107.825
CNS0095613Golden flower (tetraploid) 186.548
CNS0095614Golden flower (tetraploid) 2136.143
CNS0095615Golden flower (tetraploid) 366.279
CRA001975CRR073297Stem 1120.575
CRR073298Stem 2117.448
CRR073299Stem 3106.540
CRR073300Leaf 1152.862
CRR073301Leaf 2133.459
CRR073302Leaf 3145.445
CRR073303Juvenile bud 1128.317
CRR073304Juvenile bud 2137.026
CRR073305Juvenile bud 3118.272
CRR073306Third green 165.777
CRR073307Third green 258.439
CRR073308Third green 366.050
CRR073309Second white 174.185
CRR073310Second white 264.253
CRR073311Second white 352.274
CRR073312Silver flowering 173.459
CRR073313Silver flowering 289.335
CRR073314Silver flowering 381.344
CRR073315Gold flowering 154.129
CRR073316Gold flowering 268.634
CRR073317Gold flowering 358.025
CRR073318Tawny withering 1135.308
CRR073319Tawny withering 291.841
CRR073320Tawny withering 3155.196