Gene detail

Detail information of GWHGAAZE014244

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI19285.3	5.2864E-106	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q8GXL7\|GAT24_ARATH	2E-61	GATA transcription factor 24
trEMBL	tr\|F6H147\|F6H147_VITVI	9E-106	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45669.1}
TAIR10	AT3G21175.2	5E-47	ZIM-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	8677165	8679674	-
GWHAAZE00000004	mRNA	8677165	8679674	-
GWHAAZE00000004	exon	8677165	8677182	-
GWHAAZE00000004	exon	8677374	8677488	-
GWHAAZE00000004	exon	8677607	8677720	-
GWHAAZE00000004	exon	8678313	8678446	-
GWHAAZE00000004	exon	8678540	8678626	-
GWHAAZE00000004	exon	8679383	8679476	-
GWHAAZE00000004	exon	8679661	8679674	-
GWHAAZE00000004	CDS	8679661	8679674	-
GWHAAZE00000004	CDS	8679383	8679476	-
GWHAAZE00000004	CDS	8678540	8678626	-
GWHAAZE00000004	CDS	8678313	8678446	-
GWHAAZE00000004	CDS	8677607	8677720	-
GWHAAZE00000004	CDS	8677374	8677488	-
GWHAAZE00000004	CDS	8677165	8677182	-

Transcript Sequence
>GWHTAAZE014258 ATGTTGTTTGATTGCCATGGAAGTTTTGTGGTGCCTTCTAGAACCAGTGAGCTGACTCTTGCGTTTGAGGGAGAGGTTTACGTGTTCCCTTCTGTTACACCTGAGAAGGTGCAAGCGGTACTCTTGCTGTTGGGTAGCCGTGAAATTCCTACTGGTGTGCCCACCATCGATGTTCCATTTGATCCAATAAACAGGGTTGTGGACGATACACCAAAGCGGTCAAATCTTTCACGAAGAATTGCCTCTCTGGTAAGGTTCCGTGAAAAACGGAAGGAGCGTTGCTTTGACAAGAAAATTAGGTACAACGTCCGAAAAGAGGTTGCTCAGAGGATGCACCGGAAGAATGGTCAGTTTGCTTCCTCAAAAGAAGGATCAGGGTCATCTAGTTGGGATTCTGGAAAGAGTTGCCCTCAAGGTGATGGGACACATCATCCAGAAACTGTTCTCCGGAGGTGTCAACATTGTGGTGTTAGCGAGAATTCTACTCCAGCAATGCGCCGCGGGCCTGCTGGTCCGAGGACGCTCTGCAATGCATGCGGGCTTATGTGGGCAAACAAGGTTGTCATTCAGCTGTAA

Network for GWHGAAZE014244

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06200.15	tify	13	45	6.30E-10
PF06203.15	CCT	79	121	2.40E-14
PF00320.28	GATA	152	186	1.10E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.654
	SRR3591706	second leaf	18.194
	SRR3591707	mature leaf	28.786
	SRR3591708	Shoot apex	29.810
	SRR3591709	Stem	40.888
	SRR3591710	White floral bud	16.888
	SRR3591711	White flower	23.822
	SRR3591712	Green floral bud	19.664
	SRR3591713	Yellow flower	28.935
SRP173429	SRR8316895	Juvenile bud stage	16.092
	SRR8316896	Juvenile bud stage	21.706
	SRR8316897	Juvenile bud stage	9.609
	SRR8316894	Third green stage	8.448
	SRR8316900	Third green stage	21.404
	SRR8316901	Third green stage	22.046
	SRR8316898	Complete white stage	11.796
	SRR8316899	Complete white stage	38.591
	SRR8316903	Complete white stage	19.764
	SRR8316902	Silver flowering stage	12.536
	SRR8316904	Silver flowering stage	16.898
	SRR8316905	Silver flowering stage	9.912
	SRR8316906	Gold flowering stage	34.105
	SRR8316907	Gold flowering stage	22.233
	SRR8316908	Gold flowering stage	31.783
SRP132670	SRR6706286	Control	31.209
	SRR6706287	Light intensity 50%	31.755
	SRR6706288	Light intensity 20%	30.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.605
	CNS0095593	Slightly white alabastrum(diploid) 2	9.888
	CNS0095594	Slightly white alabastrum(diploid) 3	14.033
	CNS0095595	Whole white alabastrum(diploid) 2	11.230
	CNS0095596	Whole white alabastrum(diploid) 3	9.387
	CNS0095597	Whole white alabastrum(diploid) 4	7.157
	CNS0095598	Silvery flower (diploied) 1	21.566
	CNS0095599	Silvery flower (diploied) 2	13.066
	CNS0095600	Silvery flower (diploied) 3	19.999
	CNS0095601	Golden flower (diploid) 1	12.225
	CNS0095602	Golden flower (diploid) 2	23.353
	CNS0095603	Golden flower (diploid) 3	23.537
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.432
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.421
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.670
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.182
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.315
	CNS0095610	Silvery flower (tetraploid) 1	21.219
	CNS0095611	Silvery flower (tetraploid) 2	23.023
	CNS0095612	Silvery flower (tetraploid) 3	16.643
	CNS0095613	Golden flower (tetraploid) 1	18.088
	CNS0095614	Golden flower (tetraploid) 2	20.753
	CNS0095615	Golden flower (tetraploid) 3	29.128
CRA001975	CRR073297	Stem 1	50.453
	CRR073298	Stem 2	39.012
	CRR073299	Stem 3	51.908
	CRR073300	Leaf 1	50.447
	CRR073301	Leaf 2	49.458
	CRR073302	Leaf 3	44.642
	CRR073303	Juvenile bud 1	44.399
	CRR073304	Juvenile bud 2	38.203
	CRR073305	Juvenile bud 3	50.111
	CRR073306	Third green 1	18.392
	CRR073307	Third green 2	16.390
	CRR073308	Third green 3	14.958
	CRR073309	Second white 1	28.228
	CRR073310	Second white 2	27.781
	CRR073311	Second white 3	22.744
	CRR073312	Silver flowering 1	22.487
	CRR073313	Silver flowering 2	22.770
	CRR073314	Silver flowering 3	29.399
	CRR073315	Gold flowering 1	76.085
	CRR073316	Gold flowering 2	92.524
	CRR073317	Gold flowering 3	76.841
	CRR073318	Tawny withering 1	79.668
	CRR073319	Tawny withering 2	73.194
	CRR073320	Tawny withering 3	82.475