Gene detail

Detail information of GWHGAAZE014270

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002283927.2	PREDICTED: transport inhibitor response 1-like protein [Vitis vinifera]
Swissprot	tr\|Q9LTX2\|TIR1L_ARATH	Transport inhibitor response 1-like protein
trEMBL	tr\|A5AZ08\|A5AZ08_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN80598.1}
TAIR10	AT5G49980.1	auxin F-box protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9250196	9252614	+
GWHAAZE00000004	mRNA	9250196	9252614	+
GWHAAZE00000004	exon	9250196	9250773	+
GWHAAZE00000004	exon	9251263	9251764	+
GWHAAZE00000004	exon	9251853	9252614	+
GWHAAZE00000004	CDS	9250196	9250773	+
GWHAAZE00000004	CDS	9251263	9251764	+
GWHAAZE00000004	CDS	9251853	9252614	+

Transcript Sequence
>GWHTAAZE014284 ATGAGCGACGATCGAGCCGAAATGTCCGAAGACGACGACCGTCCCTCGCCTTCCGATCTAGTCGGCTCCGCCACCAACCGCAACCGCAGCTCCCCCGTCTGCGCCGGCGAGTACATCTCCCCCTACCCCGACCAAATCCTCGAGAACGTTCTCGAAGACGTCCTCGTTTTCCTAACCTCCCGCCGGGACCGTAACGCCGTCTCTCTTGTCTGCAAGTCGTGGTACCGGGCGGAGGCACTCACCAGATCCGACCTATTCATCGGCAACTGCTATGCCGTTTCGCCTCCCCGGGTCACGGCCCGCTTCGAGAGGGTCAAGTCCCTGGCGCTCAAGGGGAAGCCCCGTTTCGCGGACTTCAGTTTGCTGCCGTCCGACTGGGGTGCGCACTTCACCCCCTGGGTAAACGCCATGGCCGTTTCCTATCCTGCGCTGGAGAAGCTTTACCTCAAGCGAATGTCTGTTACTGATGATGATCTGGCACTTCTGGCCCGTTCCTTCCCACTTTTCAAGGAGCTTGTACTCGTTTGTTGTGAAGGTTTTGGTACCAGTGGACTCGCTATGGTGGCTAGTCATTGCAGGCAACTTCGAGTGCTTGATCTGATTGAGGACGAGGTTACAGATGATGAAGTGGATTGGATTTCTTGTTTTCCAGAGGGGGGAACTTGTCTGGAATCACTGATTTTTGACTGTGTTGAATGTCCTATTACTTTCGAGGCATTGGAGTGGCTTGTGGCAAGGTCTCCTTCCCTGAAGAAGCTTCGATTGAACCGCTATGTTTCAATTGGCCAGCTTTACCGTTTGATGATTCGAGCTCCACAGCTGACCCACCTGGGCACGGGCTCGTTTTCCCCGCAGGACAATGATCCTCAGGGCGACCAACATCCCGATTATGCTTCTGCTTTTAGTGCTTGCAGATCGTTAGTTTGTCTTTCTGGGTTCAGGGAAGTTATACCAGACTTTCTAAGTGCAATTTATCCCGTTTGTGGTAACCTCACCTCACTGAATTTTAGCTACGCCAACATCAGTGCTGAACAACTCAGATCAGTCATTTGCCACTGCCCTAAACTCCAAATCTTTTGGGTTCTTGATTCCATATGTGATGAAGGGCTGCAGGCAGTGGCTGAAACATGTAAGGACCTTCGCGAGCTTCGGGTTTTCCCTATCGACGCCACGGAAAACAATGAGGGCCCTGTTTCTGACGTGGGTCTCCTTGCAATTTCCGAGGGGTGTAGGAAGTTGCAATCAATTTTATATTTCTGCCAACAGATGACGAATGCAGCTGTGATAGCCATGTCAAAGAACTGCCCAGATCTTGTGGTATTCCGTCTCTGTATAATAGGGCGGTACCGGCCCGACCGTGTTACTGGTGAGCCTATGGACGAGGGTTTTGGAGCCATTGTGAAGAACTGTAAGAAGCTCACTCGCCTTGCGGTTTCGGGTCTACTTACCGACAAGGCTTTCGGTTATATCGGCCAGTATGGGAAATTGGTGAGAACATTGTCGGTTGCTTTTGCTGGAGATAGTGATTTGGGGCTAAAATATGTGCTGGAGGGCTGCCCTAAGTTGGCTAAGCTTGAAATTAGAGATAGCCCTTTTGGGGATTGTGCTTTGCGGGCTGGTTTGCCTCACTATTACAACATGAGATTTGTTTGGATGTCGACTTGTAAAATAACTTGGCAGGGTTGTAAGGAGATTGCTCGACAAATGCCTGGGTTGGTAGTTGAAGTTTTTGGTAGGGACGAGGTGCCAGTGGAAAAGGGTGATGTTGTTGGTACTCTTTACATGTATCGATCTCTTGATGGGCCGAGGGCTGATGCACCAAATTTTGTGAGAATCCTGTGA

Network for GWHGAAZE014270

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18511.2	F-box_5	44	83	2.40E-20
PF18791.2	Transp_inhibit	104	149	3.70E-23

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.968
	SRR3591706	second leaf	39.218
	SRR3591707	mature leaf	51.261
	SRR3591708	Shoot apex	71.606
	SRR3591709	Stem	74.237
	SRR3591710	White floral bud	78.328
	SRR3591711	White flower	81.597
	SRR3591712	Green floral bud	58.889
	SRR3591713	Yellow flower	63.868
SRP173429	SRR8316895	Juvenile bud stage	11.853
	SRR8316896	Juvenile bud stage	14.681
	SRR8316897	Juvenile bud stage	5.205
	SRR8316894	Third green stage	9.998
	SRR8316900	Third green stage	27.975
	SRR8316901	Third green stage	25.379
	SRR8316898	Complete white stage	27.007
	SRR8316899	Complete white stage	50.143
	SRR8316903	Complete white stage	51.075
	SRR8316902	Silver flowering stage	24.193
	SRR8316904	Silver flowering stage	29.307
	SRR8316905	Silver flowering stage	16.334
	SRR8316906	Gold flowering stage	54.487
	SRR8316907	Gold flowering stage	46.933
	SRR8316908	Gold flowering stage	57.715
SRP132670	SRR6706286	Control	38.538
	SRR6706287	Light intensity 50%	42.787
	SRR6706288	Light intensity 20%	44.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.902
	CNS0095593	Slightly white alabastrum(diploid) 2	13.125
	CNS0095594	Slightly white alabastrum(diploid) 3	15.046
	CNS0095595	Whole white alabastrum(diploid) 2	15.109
	CNS0095596	Whole white alabastrum(diploid) 3	14.490
	CNS0095597	Whole white alabastrum(diploid) 4	14.344
	CNS0095598	Silvery flower (diploied) 1	35.148
	CNS0095599	Silvery flower (diploied) 2	19.175
	CNS0095600	Silvery flower (diploied) 3	55.393
	CNS0095601	Golden flower (diploid) 1	18.561
	CNS0095602	Golden flower (diploid) 2	55.811
	CNS0095603	Golden flower (diploid) 3	50.894
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.710
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.234
	CNS0095606	Slightly white alabastrum(tetraploid) 3	57.823
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.383
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.479
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.741
	CNS0095610	Silvery flower (tetraploid) 1	47.928
	CNS0095611	Silvery flower (tetraploid) 2	41.038
	CNS0095612	Silvery flower (tetraploid) 3	53.337
	CNS0095613	Golden flower (tetraploid) 1	22.150
	CNS0095614	Golden flower (tetraploid) 2	45.757
	CNS0095615	Golden flower (tetraploid) 3	63.019
CRA001975	CRR073297	Stem 1	50.415
	CRR073298	Stem 2	45.404
	CRR073299	Stem 3	52.077
	CRR073300	Leaf 1	55.517
	CRR073301	Leaf 2	50.942
	CRR073302	Leaf 3	46.709
	CRR073303	Juvenile bud 1	47.573
	CRR073304	Juvenile bud 2	49.588
	CRR073305	Juvenile bud 3	61.294
	CRR073306	Third green 1	57.384
	CRR073307	Third green 2	43.799
	CRR073308	Third green 3	57.060
	CRR073309	Second white 1	64.539
	CRR073310	Second white 2	46.089
	CRR073311	Second white 3	54.131
	CRR073312	Silver flowering 1	47.789
	CRR073313	Silver flowering 2	57.468
	CRR073314	Silver flowering 3	58.720
	CRR073315	Gold flowering 1	31.739
	CRR073316	Gold flowering 2	39.977
	CRR073317	Gold flowering 3	45.466
	CRR073318	Tawny withering 1	58.705
	CRR073319	Tawny withering 2	32.988
	CRR073320	Tawny withering 3	47.761