Gene detail

Detail information of GWHGAAZE014334

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008229458.1	3.4232E-147	PREDICTED: LOW QUALITY PROTEIN: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	2E-116	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|M5XAQ1\|M5XAQ1_PRUPE	2E-146	Uncharacterized protein {ECO:0000313\|EMBL:EMJ16130.1}
TAIR10	AT4G08850.1	1E-99	Leucine-rich repeat receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10370150	10373000	+
GWHAAZE00000004	mRNA	10370150	10373000	+
GWHAAZE00000004	exon	10370150	10370273	+
GWHAAZE00000004	exon	10370358	10370625	+
GWHAAZE00000004	exon	10370783	10371369	+
GWHAAZE00000004	exon	10371439	10371879	+
GWHAAZE00000004	exon	10372696	10373000	+
GWHAAZE00000004	CDS	10370150	10370273	+
GWHAAZE00000004	CDS	10370358	10370625	+
GWHAAZE00000004	CDS	10370783	10371369	+
GWHAAZE00000004	CDS	10371439	10371879	+
GWHAAZE00000004	CDS	10372696	10373000	+

Transcript Sequence
>GWHTAAZE014348 ATGTTGACGGGTTCTCTACCTGAGAATCTATGCAGCACTGGATTACTTAATTTTTACATCTTACAACAATTATCTTGCCGGTTCTATAGGCACAAGCCTGAGAAACTGCACAAATTTATTCAGATTCCAATAATTTTGACGGAGAACTTTCTCAAAAATGGGGAGAGTAGGCATTTGGCAAGCCTGAAAGTCTCTAACAACAGAATTTCCGGTAGAATACCACGAGAGCTGGGACAAGCAATTCAACTGGGCGAACTTAACCTTTCATCAAATGCACTAGAGGGTGAAATTCGTAAAGAATTGGGGAATTTGGCATCGTTATTCATGCTGAATTTAGCGAATAAGAAGCTCTCTGGTGGAATTCCTTCAGAAACCGGAAGGCTAATCTGGCTAAACAGATTCAGTGAGGCTATTCCCCTTCAAATCGGGTATTTGCAGTCCCCTCAAACTCTTGATCTCAGTCAGAATTTTCTCAGAGGAGAGATACATCAGCAGCTTGGAGTATTGCGTATGTTGGTAATGCTAAATCTCTCTCACAATAATCTCTCTGGCTCGATTCCACCCTGTTTTGATAACCTAGTAAGCTTGCTCACCATTGATTTATCGTACAATCATCTTGAAGGTCCACTTCCTAACAATAGAGCCTTTCTCGGGGCTCCATTAGAATCATTCAGAAATAATACAGGCTTGTGTGGGAATACTGCTGGTCTAAAATCTTGCTACTTGACTACATCGGACAACAAAAGAAAAAGGATAAAAGTGATCATCATTGTAGTTTCTACTTTTGGCGCACTTTTCCTCGTTGCGCTTTTTATTGGCATTTATAGTGGAACAGTGTTGATTAAGAGAGGAAACAAGTTAGTAAAAGGTTCGCATTTTGAACCTTTATCGACTATATGGAGGTGCATAAAATGCGGTGAAGCAGTGGGCAAACTTATCTTCGAAGCAGCCGACGGATTCAGCTTGAAGCACTGCATTGTGCACCAAGAAGTGAAAGAGAGCAGTAGCACGTATTACAAAGCGTACGAAAATGAGACACGTGCGCTAAGAGAGATACAGCACTGCAACATAGTGAAGCGTTATGGGTTTGGCAGACATGCAAAGCACATATTTTTGGTGTATAAGTTTATGGAAAGGGGAAGTTTGAGGAAGATTTTGAGCAATGATGAAGAGGCAATGAAGCTGGATTGGGGTAAGAGGGTGGATATTGTGAAGGGAGTGGCAAGTGCGTTGTCTTATATGCACCACGATTGCTATCCGCCATTAATTCATCGTGATATTTCAAGCAGCAATGTCTTGTTGAATTCTGAATTTGAAGCTCACATCTCTGATTTTGGTTCATCTATGCGGGTTTTAGACTACGATGATACATTCAATAATTGGACCAGATTTACGGGCACCGTTGGATACGCAGCTCCAGAACTAGCAGTAGCACCGAGTGTAAAAGGCAATGAAAAATGCGACGTTTACAGCTTTGGAGTGGTGGCTATGGAACTGATAATGGGAAGGCATCCAGGTGATCTGGTGGGGCTGCGTTCATTAATGTTGGGGAATCGTACTCCTCTGAATAATGCTTTAGACCAACGGCTACCACTTCCTTTCCATGGAAATATGGCAGAGGAAGTGGTTTCCGTTATCAATCTTGCTTTTATGTGCTTGCTTCCCAACCCTCGATCTCGCCCAACAATGAGACAAATCAAGTGGGAGCTCTCTGCACAAAGATAG

Network for GWHGAAZE014334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	149	206	1.50E-06
PF00069.26	Pkinase	322	567	6.10E-33

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.005
	SRR3591710	White floral bud	0.422
	SRR3591711	White flower	0.767
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.441
SRP173429	SRR8316895	Juvenile bud stage	0.033
	SRR8316896	Juvenile bud stage	0.125
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.115
	SRR8316900	Third green stage	0.194
	SRR8316901	Third green stage	0.125
	SRR8316898	Complete white stage	0.114
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.540
	SRR8316902	Silver flowering stage	0.090
	SRR8316904	Silver flowering stage	0.074
	SRR8316905	Silver flowering stage	0.220
	SRR8316906	Gold flowering stage	1.646
	SRR8316907	Gold flowering stage	0.778
	SRR8316908	Gold flowering stage	1.372
SRP132670	SRR6706286	Control	0.070
	SRR6706287	Light intensity 50%	0.129
	SRR6706288	Light intensity 20%	0.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.190
	CNS0095593	Slightly white alabastrum(diploid) 2	0.234
	CNS0095594	Slightly white alabastrum(diploid) 3	0.045
	CNS0095595	Whole white alabastrum(diploid) 2	0.045
	CNS0095596	Whole white alabastrum(diploid) 3	0.028
	CNS0095597	Whole white alabastrum(diploid) 4	0.106
	CNS0095598	Silvery flower (diploied) 1	0.120
	CNS0095599	Silvery flower (diploied) 2	0.179
	CNS0095600	Silvery flower (diploied) 3	0.656
	CNS0095601	Golden flower (diploid) 1	0.823
	CNS0095602	Golden flower (diploid) 2	0.625
	CNS0095603	Golden flower (diploid) 3	0.960
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.044
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.426
	CNS0095611	Silvery flower (tetraploid) 2	0.419
	CNS0095612	Silvery flower (tetraploid) 3	11.686
	CNS0095613	Golden flower (tetraploid) 1	2.394
	CNS0095614	Golden flower (tetraploid) 2	0.423
	CNS0095615	Golden flower (tetraploid) 3	1.519
CRA001975	CRR073297	Stem 1	0.072
	CRR073298	Stem 2	0.162
	CRR073299	Stem 3	0.001
	CRR073300	Leaf 1	0.407
	CRR073301	Leaf 2	0.208
	CRR073302	Leaf 3	0.023
	CRR073303	Juvenile bud 1	0.140
	CRR073304	Juvenile bud 2	0.070
	CRR073305	Juvenile bud 3	0.170
	CRR073306	Third green 1	1.421
	CRR073307	Third green 2	0.739
	CRR073308	Third green 3	1.132
	CRR073309	Second white 1	1.575
	CRR073310	Second white 2	2.857
	CRR073311	Second white 3	1.707
	CRR073312	Silver flowering 1	4.872
	CRR073313	Silver flowering 2	2.537
	CRR073314	Silver flowering 3	1.864
	CRR073315	Gold flowering 1	0.188
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.003
	CRR073318	Tawny withering 1	0.146
	CRR073319	Tawny withering 2	0.304
	CRR073320	Tawny withering 3	0.000