Detail information of GWHGAAZE014344


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011074160.10PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Sesamum indicum]
Swissprottr|Q8H0T9|KTNB1_ARATH2E-11Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|F6H0V9|F6H0V9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45556.1}
TAIR10AT1G78070.11E-178Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1064020110646360-
GWHAAZE00000004mRNA1064020110646360-
GWHAAZE00000004exon1064020110640614-
GWHAAZE00000004exon1064126410641350-
GWHAAZE00000004exon1064147810641583-
GWHAAZE00000004exon1064168110641772-
GWHAAZE00000004exon1064184710641957-
GWHAAZE00000004exon1064204010642174-
GWHAAZE00000004exon1064544010645526-
GWHAAZE00000004exon1064590910646076-
GWHAAZE00000004exon1064619910646360-
GWHAAZE00000004five_prime_UTR1064635210646360-
GWHAAZE00000004CDS1064619910646351-
GWHAAZE00000004CDS1064590910646076-
GWHAAZE00000004CDS1064544010645526-
GWHAAZE00000004CDS1064204010642174-
GWHAAZE00000004CDS1064184710641957-
GWHAAZE00000004CDS1064168110641772-
GWHAAZE00000004CDS1064147810641583-
GWHAAZE00000004CDS1064126410641350-
GWHAAZE00000004CDS1064020110640614-
Transcript Sequence

Network for GWHGAAZE014344

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD403133505.80E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf179.821
SRR3591706second leaf44.217
SRR3591707mature leaf86.711
SRR3591708Shoot apex66.435
SRR3591709Stem219.299
SRR3591710White floral bud133.477
SRR3591711White flower150.584
SRR3591712Green floral bud57.965
SRR3591713Yellow flower142.200
SRP173429 SRR8316895Juvenile bud stage 101.776
SRR8316896Juvenile bud stage 127.077
SRR8316897Juvenile bud stage 97.214
SRR8316894Third green stage 31.111
SRR8316900Third green stage 59.373
SRR8316901Third green stage 76.523
SRR8316898Complete white stage 25.482
SRR8316899Complete white stage 131.412
SRR8316903Complete white stage 62.348
SRR8316902Silver flowering stage32.160
SRR8316904Silver flowering stage49.742
SRR8316905Silver flowering stage24.186
SRR8316906Gold flowering stage 59.217
SRR8316907Gold flowering stage 69.187
SRR8316908Gold flowering stage 60.640
SRP132670SRR6706286Control65.047
SRR6706287Light intensity 50%60.433
SRR6706288Light intensity 20%59.784
CNP0000432CNS0095592Slightly white alabastrum(diploid) 165.859
CNS0095593Slightly white alabastrum(diploid) 275.048
CNS0095594Slightly white alabastrum(diploid) 357.348
CNS0095595Whole white alabastrum(diploid) 264.060
CNS0095596Whole white alabastrum(diploid) 325.777
CNS0095597Whole white alabastrum(diploid) 440.115
CNS0095598Silvery flower (diploied) 1198.214
CNS0095599Silvery flower (diploied) 2180.309
CNS0095600Silvery flower (diploied) 3103.560
CNS0095601Golden flower (diploid) 1257.681
CNS0095602Golden flower (diploid) 2191.698
CNS0095603Golden flower (diploid) 3192.760
CNS0095604Slightly white alabastrum(tetraploid) 132.556
CNS0095605Slightly white alabastrum(tetraploid) 226.915
CNS0095606Slightly white alabastrum(tetraploid) 358.792
CNS0095607Whole white alabastrum(tetraploid) 124.617
CNS0095608Whole white alabastrum(tetraploid) 214.160
CNS0095609Whole white alabastrum(tetraploid) 330.392
CNS0095610Silvery flower (tetraploid) 182.015
CNS0095611Silvery flower (tetraploid) 282.343
CNS0095612Silvery flower (tetraploid) 325.420
CNS0095613Golden flower (tetraploid) 149.158
CNS0095614Golden flower (tetraploid) 251.080
CNS0095615Golden flower (tetraploid) 344.548
CRA001975CRR073297Stem 172.427
CRR073298Stem 256.579
CRR073299Stem 312.893
CRR073300Leaf 170.210
CRR073301Leaf 280.470
CRR073302Leaf 315.723
CRR073303Juvenile bud 118.941
CRR073304Juvenile bud 25.665
CRR073305Juvenile bud 320.669
CRR073306Third green 10.658
CRR073307Third green 21.197
CRR073308Third green 31.159
CRR073309Second white 12.283
CRR073310Second white 25.009
CRR073311Second white 33.191
CRR073312Silver flowering 15.724
CRR073313Silver flowering 25.820
CRR073314Silver flowering 36.760
CRR073315Gold flowering 112.217
CRR073316Gold flowering 220.782
CRR073317Gold flowering 34.786
CRR073318Tawny withering 140.815
CRR073319Tawny withering 254.493
CRR073320Tawny withering 333.626