Detail information of GWHGAAZE014347


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011074157.10PREDICTED: phosphoglycerate mutase [Sesamum indicum]
trEMBLtr|M5XCB1|M5XCB1_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ23559.1}
TAIR10AT1G22170.11E-138Phosphoglycerate mutase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1071281110715441-
GWHAAZE00000004mRNA1071281110715441-
GWHAAZE00000004exon1071530910715441-
GWHAAZE00000004exon1071429310714564-
GWHAAZE00000004exon1071391410714137-
GWHAAZE00000004exon1071367910713797-
GWHAAZE00000004exon1071343410713590-
GWHAAZE00000004exon1071324110713342-
GWHAAZE00000004exon1071303210713151-
GWHAAZE00000004exon1071281110712855-
GWHAAZE00000004five_prime_UTR1071530910715441-
GWHAAZE00000004five_prime_UTR1071456410714564-
GWHAAZE00000004CDS1071429310714563-
GWHAAZE00000004CDS1071391410714137-
GWHAAZE00000004CDS1071367910713797-
GWHAAZE00000004CDS1071343410713590-
GWHAAZE00000004CDS1071324110713342-
GWHAAZE00000004CDS1071303210713151-
GWHAAZE00000004CDS1071281110712855-
Transcript Sequence

Network for GWHGAAZE014347

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00300.23His_Phos_1951661.50E-17
PF00300.23His_Phos_11712977.10E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01834PGAM, gpmA Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0006096biological_processglycolytic process
GO:0003824molecular_functioncatalytic activity
GO:0004619molecular_functionphosphoglycerate mutase activity
GO:0016868molecular_functionintramolecular transferase activity, phosphotransferases

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf49.880
SRR3591706second leaf177.689
SRR3591707mature leaf15.578
SRR3591708Shoot apex67.684
SRR3591709Stem23.328
SRR3591710White floral bud93.335
SRR3591711White flower75.215
SRR3591712Green floral bud38.478
SRR3591713Yellow flower47.409
SRP173429 SRR8316895Juvenile bud stage 57.322
SRR8316896Juvenile bud stage 122.604
SRR8316897Juvenile bud stage 48.312
SRR8316894Third green stage 33.077
SRR8316900Third green stage 25.325
SRR8316901Third green stage 23.605
SRR8316898Complete white stage 16.879
SRR8316899Complete white stage 22.768
SRR8316903Complete white stage 21.627
SRR8316902Silver flowering stage44.425
SRR8316904Silver flowering stage63.268
SRR8316905Silver flowering stage34.631
SRR8316906Gold flowering stage 90.950
SRR8316907Gold flowering stage 101.255
SRR8316908Gold flowering stage 135.551
SRP132670SRR6706286Control30.215
SRR6706287Light intensity 50%35.732
SRR6706288Light intensity 20%27.524
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.014
CNS0095593Slightly white alabastrum(diploid) 222.926
CNS0095594Slightly white alabastrum(diploid) 339.490
CNS0095595Whole white alabastrum(diploid) 235.882
CNS0095596Whole white alabastrum(diploid) 38.405
CNS0095597Whole white alabastrum(diploid) 424.031
CNS0095598Silvery flower (diploied) 18.671
CNS0095599Silvery flower (diploied) 210.145
CNS0095600Silvery flower (diploied) 321.645
CNS0095601Golden flower (diploid) 18.826
CNS0095602Golden flower (diploid) 219.443
CNS0095603Golden flower (diploid) 318.536
CNS0095604Slightly white alabastrum(tetraploid) 124.676
CNS0095605Slightly white alabastrum(tetraploid) 224.693
CNS0095606Slightly white alabastrum(tetraploid) 364.883
CNS0095607Whole white alabastrum(tetraploid) 112.392
CNS0095608Whole white alabastrum(tetraploid) 29.945
CNS0095609Whole white alabastrum(tetraploid) 330.975
CNS0095610Silvery flower (tetraploid) 144.495
CNS0095611Silvery flower (tetraploid) 229.401
CNS0095612Silvery flower (tetraploid) 3224.569
CNS0095613Golden flower (tetraploid) 184.402
CNS0095614Golden flower (tetraploid) 267.515
CNS0095615Golden flower (tetraploid) 354.133
CRA001975CRR073297Stem 198.494
CRR073298Stem 2117.861
CRR073299Stem 3136.715
CRR073300Leaf 134.318
CRR073301Leaf 234.581
CRR073302Leaf 332.941
CRR073303Juvenile bud 128.008
CRR073304Juvenile bud 218.599
CRR073305Juvenile bud 335.543
CRR073306Third green 1264.786
CRR073307Third green 2203.537
CRR073308Third green 3239.099
CRR073309Second white 1210.791
CRR073310Second white 2263.084
CRR073311Second white 3243.921
CRR073312Silver flowering 1220.170
CRR073313Silver flowering 2179.333
CRR073314Silver flowering 3184.246
CRR073315Gold flowering 111.655
CRR073316Gold flowering 216.812
CRR073317Gold flowering 311.922
CRR073318Tawny withering 124.083
CRR073319Tawny withering 223.506
CRR073320Tawny withering 351.023