Gene detail

Detail information of GWHGAAZE014355

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI19111.3	5.80706E-57	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9LM55\|FBK8_ARATH	1E-40	F-box/kelch-repeat protein At1g22040
trEMBL	tr\|F6H0U8\|F6H0U8_VITVI	2E-55	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45545.1}
TAIR10	AT1G22040.1	5E-35	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10853334	10855714	+
GWHAAZE00000004	mRNA	10853334	10855714	+
GWHAAZE00000004	exon	10855260	10855714	+
GWHAAZE00000004	exon	10853671	10853785	+
GWHAAZE00000004	exon	10853334	10853528	+
GWHAAZE00000004	five_prime_UTR	10853334	10853528	+
GWHAAZE00000004	five_prime_UTR	10853671	10853785	+
GWHAAZE00000004	five_prime_UTR	10855260	10855336	+
GWHAAZE00000004	CDS	10855337	10855714	+

Transcript Sequence
>GWHTAAZE014369 AAGGCTTGAAGACAAAGAAAGCAGCGTATCTGTTACTGTACTTCTCATATATTATACTCTCTATATATACTTGCCGCCTACATAGTTATTAAAAGAGAATATATTTTTTTCTATATGTTCCTGTTTGATTTTTGTTGGTAATAATAAAGACCTAATCGACTGTTCTATGCTCTTTCGTCCTCTATGAATTATCAGGAAAATTGCCTTTTCGACCTTTCTTTCTTTCCTGAGAAAATGTAGGGGGTAAGGAAATGAATCTCGGATTTGTCAGTTCTGGTGGACTGAGATACGTAGCACTCAACCGAAGAAGCAACGGAATGAAAGAAGGGTGTAGCCAATAGCCTGTAGTTCCTCTTGATAAAGTCCTCCCAGAAGAAAAACGCTCCAATGGGGGCTTTTTTAAGCTTGCTTGGTAACAAATGTAGGAGTACAAGCGAGCAGAAGGAGGTTTCTCCCAGTGAAACCTGCAAGAGACAAAGAATGTCCCCTATCTTTTACGGCGAGAATTCAAGGCTTATTCCAAGTCTTCCCGATGAGATATCGATCCAAATTCTTGCTAGACTTCCTAGACTCTCATACTTTAGTATGAGGTTAGTAGCCCGGAACTGGAAAGCAACCATAACGAGCCACGAACTCTTCGATTTAAGAAAAGAACTTGGAATGACTGAGGAGTGGCTCTACATGTTGACTAAGGTTGAAGAAGAGAAACTTCTTTGGCATGCTCTGGACCCTCGGTCAAGAAAATGGCAGAGGTTGCCACCGATG

Network for GWHGAAZE014355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.34	F-box	44	83	7.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.826
	SRR3591706	second leaf	8.602
	SRR3591707	mature leaf	12.750
	SRR3591708	Shoot apex	8.306
	SRR3591709	Stem	20.280
	SRR3591710	White floral bud	13.451
	SRR3591711	White flower	17.488
	SRR3591712	Green floral bud	10.251
	SRR3591713	Yellow flower	17.656
SRP173429	SRR8316895	Juvenile bud stage	4.608
	SRR8316896	Juvenile bud stage	6.042
	SRR8316897	Juvenile bud stage	3.491
	SRR8316894	Third green stage	3.381
	SRR8316900	Third green stage	6.442
	SRR8316901	Third green stage	6.738
	SRR8316898	Complete white stage	3.801
	SRR8316899	Complete white stage	13.821
	SRR8316903	Complete white stage	5.514
	SRR8316902	Silver flowering stage	3.629
	SRR8316904	Silver flowering stage	5.531
	SRR8316905	Silver flowering stage	2.560
	SRR8316906	Gold flowering stage	9.529
	SRR8316907	Gold flowering stage	10.006
	SRR8316908	Gold flowering stage	8.555
SRP132670	SRR6706286	Control	3.299
	SRR6706287	Light intensity 50%	3.279
	SRR6706288	Light intensity 20%	3.314
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.651
	CNS0095593	Slightly white alabastrum(diploid) 2	3.474
	CNS0095594	Slightly white alabastrum(diploid) 3	4.996
	CNS0095595	Whole white alabastrum(diploid) 2	5.030
	CNS0095596	Whole white alabastrum(diploid) 3	4.144
	CNS0095597	Whole white alabastrum(diploid) 4	5.889
	CNS0095598	Silvery flower (diploied) 1	7.589
	CNS0095599	Silvery flower (diploied) 2	8.902
	CNS0095600	Silvery flower (diploied) 3	11.494
	CNS0095601	Golden flower (diploid) 1	5.044
	CNS0095602	Golden flower (diploid) 2	17.419
	CNS0095603	Golden flower (diploid) 3	17.051
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.202
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.405
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.169
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.336
	CNS0095610	Silvery flower (tetraploid) 1	15.768
	CNS0095611	Silvery flower (tetraploid) 2	15.793
	CNS0095612	Silvery flower (tetraploid) 3	7.149
	CNS0095613	Golden flower (tetraploid) 1	7.223
	CNS0095614	Golden flower (tetraploid) 2	14.409
	CNS0095615	Golden flower (tetraploid) 3	19.164
CRA001975	CRR073297	Stem 1	5.249
	CRR073298	Stem 2	5.907
	CRR073299	Stem 3	3.999
	CRR073300	Leaf 1	2.895
	CRR073301	Leaf 2	3.851
	CRR073302	Leaf 3	3.785
	CRR073303	Juvenile bud 1	3.081
	CRR073304	Juvenile bud 2	2.103
	CRR073305	Juvenile bud 3	3.325
	CRR073306	Third green 1	2.298
	CRR073307	Third green 2	3.819
	CRR073308	Third green 3	3.641
	CRR073309	Second white 1	1.348
	CRR073310	Second white 2	2.542
	CRR073311	Second white 3	2.322
	CRR073312	Silver flowering 1	2.466
	CRR073313	Silver flowering 2	1.148
	CRR073314	Silver flowering 3	1.122
	CRR073315	Gold flowering 1	2.360
	CRR073316	Gold flowering 2	5.863
	CRR073317	Gold flowering 3	6.420
	CRR073318	Tawny withering 1	7.714
	CRR073319	Tawny withering 2	8.232
	CRR073320	Tawny withering 3	7.050