Gene detail

Detail information of GWHGAAZE014358

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285820.1	9.4761E-167	PREDICTED: transcription factor TGA4 [Vitis vinifera]
Swissprot	tr\|Q93ZE2\|TGA7_ARATH	1E-129	Transcription factor TGA7
trEMBL	tr\|F6H0P0\|F6H0P0_VITVI	4E-167	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45537.1}
TAIR10	AT1G77920.1	3E-96	bZIP transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10918770	10922107	+
GWHAAZE00000004	mRNA	10918770	10922107	+
GWHAAZE00000004	exon	10918770	10918928	+
GWHAAZE00000004	exon	10919023	10919094	+
GWHAAZE00000004	exon	10919364	10919441	+
GWHAAZE00000004	exon	10919527	10919578	+
GWHAAZE00000004	exon	10919793	10920064	+
GWHAAZE00000004	exon	10920872	10921087	+
GWHAAZE00000004	exon	10921772	10922107	+
GWHAAZE00000004	CDS	10918770	10918928	+
GWHAAZE00000004	CDS	10919023	10919094	+
GWHAAZE00000004	CDS	10919364	10919441	+
GWHAAZE00000004	CDS	10919527	10919578	+
GWHAAZE00000004	CDS	10919793	10920064	+
GWHAAZE00000004	CDS	10920872	10921087	+
GWHAAZE00000004	CDS	10921772	10921948	+
GWHAAZE00000004	three_prime_UTR	10921949	10922107	+

Transcript Sequence
>GWHTAAZE014372 ATGGCCTCTTCATCAAGTCAGTTTGCGATTGCGAGAAAGATGGGTATATATGATCCACTTCACCAGATAAGCATGTGGGAGGACACCTTCGAAGTAGGTATCAGTCCAATCACGGGCACTGATACAATTCTACAAGCAGATGTAAGACTGGATAACAAGTTGGGATATACTTCTCATGAATCCTTAGGACCTTCGGCAGATAATCAAGTGCCAAAAAGTACTTCTGATAAGGCATATGTTCAGCAATTAGAAACAAGTCGTTTAAAGTTGGCACAATTAGAACAGGAACTTGAGAGAGCTAGACAGCAGGGTGTGTACACCGGAGGTACGAGAAATACGGGATCTGTATCTGTAGATTCAGGGATTGTTGCATTTGAGATGGAATATATGCTCTGGGTTGAAGAACATCAAAAGAAGAATCTTGAACTTAGGAATGGGTTGCAGTCTCATATAAGTGAAATTGAGCTCCATGTATTTGTGGAAAGTGGCTTAAACCACTACTACGATCTTTTCCGCATGAAAGCAGATGCTGCAAAGGCCGATGTCTTCTATTTTATGTCTGGCATGTGGAGAACATCAGTTGAGCGCTTGTTCCTTTGGATTGGAGGATTCTGTCCATCAGAGCTTCTAAATGTTTTAATGCCCCAAATTGAGCCCTTGACCGATCAACAGCTTGTAAGTGTCTGTAACCTGCAACGTTCGTGTCAGCAAGCTGAGGATGCTCTCTCACAAGGCATGGACAAGCTACAGCAGACTCTGTCTCAGAGCATTACAGCTGATGCTACAGTTGCATCAAGTATGAGTGCCGCAATGGAGAAGCTAGATGCACTGGAGGGGTTCGTGAACCAGGCAGATCACCTTCGCGAGGAAACTCTGAGGCAAATGTATCACATCTTAACAACCCGCCAAGCAGCCCGAGGGTTGGTTGCCTTGGGGGAATACTTGCAACGTCTTCGTGCTCTCACTTCACTCTGGGTTGCCCGTCCTCGTGAACTCAAGCAGAAAAATGTAATTAGTATTCCTTAGCCAGAAAGATAATTTGTAGGAATAAATTTGTGTATATTGTCAGCTTATAATTTACTCAAAGCAGCTTCCAAAATGTATATATCGAATCATAATACTGTGTATTTGAAGGCCGGCCATATTTGACTTGAATTATATGCATTCTTGGTGTTCTTGTTTGAA

Network for GWHGAAZE014358

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14144.7	DOG1	142	214	1.50E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14431	TGA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.247
	SRR3591706	second leaf	4.209
	SRR3591707	mature leaf	10.906
	SRR3591708	Shoot apex	5.110
	SRR3591709	Stem	17.612
	SRR3591710	White floral bud	10.599
	SRR3591711	White flower	19.267
	SRR3591712	Green floral bud	5.195
	SRR3591713	Yellow flower	37.442
SRP173429	SRR8316895	Juvenile bud stage	2.738
	SRR8316896	Juvenile bud stage	6.998
	SRR8316897	Juvenile bud stage	2.085
	SRR8316894	Third green stage	3.249
	SRR8316900	Third green stage	6.871
	SRR8316901	Third green stage	7.373
	SRR8316898	Complete white stage	2.819
	SRR8316899	Complete white stage	11.636
	SRR8316903	Complete white stage	5.204
	SRR8316902	Silver flowering stage	6.370
	SRR8316904	Silver flowering stage	7.688
	SRR8316905	Silver flowering stage	4.760
	SRR8316906	Gold flowering stage	18.024
	SRR8316907	Gold flowering stage	17.427
	SRR8316908	Gold flowering stage	10.703
SRP132670	SRR6706286	Control	5.497
	SRR6706287	Light intensity 50%	6.037
	SRR6706288	Light intensity 20%	5.378
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.111
	CNS0095593	Slightly white alabastrum(diploid) 2	5.105
	CNS0095594	Slightly white alabastrum(diploid) 3	7.120
	CNS0095595	Whole white alabastrum(diploid) 2	5.710
	CNS0095596	Whole white alabastrum(diploid) 3	3.709
	CNS0095597	Whole white alabastrum(diploid) 4	4.448
	CNS0095598	Silvery flower (diploied) 1	13.988
	CNS0095599	Silvery flower (diploied) 2	12.477
	CNS0095600	Silvery flower (diploied) 3	10.839
	CNS0095601	Golden flower (diploid) 1	10.851
	CNS0095602	Golden flower (diploid) 2	9.211
	CNS0095603	Golden flower (diploid) 3	9.223
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.477
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.448
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.573
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.047
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.711
	CNS0095610	Silvery flower (tetraploid) 1	12.091
	CNS0095611	Silvery flower (tetraploid) 2	13.361
	CNS0095612	Silvery flower (tetraploid) 3	8.356
	CNS0095613	Golden flower (tetraploid) 1	7.401
	CNS0095614	Golden flower (tetraploid) 2	7.629
	CNS0095615	Golden flower (tetraploid) 3	18.946
CRA001975	CRR073297	Stem 1	9.604
	CRR073298	Stem 2	6.472
	CRR073299	Stem 3	6.282
	CRR073300	Leaf 1	9.119
	CRR073301	Leaf 2	7.933
	CRR073302	Leaf 3	5.042
	CRR073303	Juvenile bud 1	6.748
	CRR073304	Juvenile bud 2	2.655
	CRR073305	Juvenile bud 3	7.188
	CRR073306	Third green 1	1.215
	CRR073307	Third green 2	1.344
	CRR073308	Third green 3	1.738
	CRR073309	Second white 1	5.757
	CRR073310	Second white 2	5.494
	CRR073311	Second white 3	5.453
	CRR073312	Silver flowering 1	2.319
	CRR073313	Silver flowering 2	3.104
	CRR073314	Silver flowering 3	1.359
	CRR073315	Gold flowering 1	17.266
	CRR073316	Gold flowering 2	17.341
	CRR073317	Gold flowering 3	10.123
	CRR073318	Tawny withering 1	4.762
	CRR073319	Tawny withering 2	4.575
	CRR073320	Tawny withering 3	5.022