Gene detail

Detail information of GWHGAAZE014370

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283706.1	0	PREDICTED: cyclic dof factor 2 [Vitis vinifera]
Swissprot	tr\|Q93ZL5\|CDF2_ARATH	2E-98	Cyclic dof factor 2
trEMBL	tr\|F6H5U5\|F6H5U5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47566.1}
TAIR10	AT5G39660.2	1E-75	cycling DOF factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11084968	11087850	+
GWHAAZE00000004	mRNA	11084968	11087850	+
GWHAAZE00000004	exon	11084968	11085168	+
GWHAAZE00000004	exon	11086600	11087850	+
GWHAAZE00000004	CDS	11084968	11085168	+
GWHAAZE00000004	CDS	11086600	11087850	+

Transcript Sequence
>GWHTAAZE014384 ATGTCGGAAGGTAAAGATCCTGCTATTAAGCTATTCGGAAGAACTATTATTCAGTCGCCTGAGATCTCGGCATTCGACGCCGATTCCCGCGGAGTTCCTCCACCTCCATCTGTTAATGATGATGATGCTATTCCTTTCTCTCAAGATCTTCCTTCTTCCACCGCAAATCATTCCATAGGCAAACGACAAGAACCGGATAAGGATGCGTTGCTAACTGATAGTAAAGAGAAGGATGGAGCCCAGTCTTTGAAGGCCGAGGAGATTGCAGATCAAAACACATCTTCAGTGATAAACGAGAACCCCAAAACACCATCTGTTGACAATGAAGTAGAACTATTAAAAAGTACAAAGACTGAAGAAGAACAGAGTGAGACAAGTAACACAGAAGAGAAGTCTCTGAAGAAACCCGACAAGATACTTCCATGTCCCCGCTGTAATAGCATGGACACCAAGTTCTGTTACTACAATAATTATAACGTCAACCAACCTCGACACTTCTGCAAAAAGTGTCAAAGATACTGGACAGCTGGTGGAACCATGAGGAACGTGCCCGTGGGTGCTGGTCGCCGCAAGAACAAGAATTTAGCCTCTCAGTACCATCACATAACCGTCTCGGAAGCTCTTCAGAGTGCCCGTGTAGATCTTTCTAGTGGACCCCACCACCCAACTATGAATGCCAATGGTACCGTCCTGACTTTTGGCTCAGACACACCCCTTTGTGAGCCGAGGTCCACAGTTTTGAAAATTACAGAGAAAACAATGATGAGCGGCCCGCAGAATGGGTTCCATAAAGCTGAAGAATTGGAAAGGTCAGTTCCTCGTGGATGTGGCGATAATGGGGATGATCACTCAAGTGGGTCCTCTGTCACTGCGGCCAATTCAGCAGATGAGATTGGTAGAATCGGGTTTCAAGATCCAAGATTGAATAGTCATAGTGGCTTCACTCCACAGGTACAATGCTTTCCCGGGGCTCCGTGGTCCTATCCGTGGAATCCGGCTCAGTGGAACTCTGCAGTACCCCCCGGCTTCCCTATGCCGTTTTATCCAGTTTCGCCTTATTGGGGTTGTACGATGCCTGGTTCTTGGAATGTGCAATGGGTTCCACAACCAGCTGCTTCTCCCCCAATATTGGGGAAGCATTCAAGGGACGAGGACTCGCTGAAATCAAGTCCCTCGAGGGAAAACGAGCGAGAGAAGGAGAATAATCCCGAGAAGTGTCTTTGGTTCCCTAAGACAATGAGAATTGATGAGCCAGGAGAAGCTGAAAAGAGCTCTTTATGGGCAACGTTAGGGTTTCAAAATGATAAAGCCGATTGTGTTAGAGGGGGAAGTCTTTTTAAGGCTTTCAAATCAAAGGGAGATGAAAAGAATCATAGTTCTGAGCCCTCCCCTGTACTACAAGCTAATCCCGCAGCACTATCTAGGTCACTCAAATTCCAGGAGAGCTTGTAA

Network for GWHGAAZE014370

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	137	194	3.30E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.864
	SRR3591706	second leaf	9.461
	SRR3591707	mature leaf	8.783
	SRR3591708	Shoot apex	12.833
	SRR3591709	Stem	13.441
	SRR3591710	White floral bud	18.429
	SRR3591711	White flower	24.914
	SRR3591712	Green floral bud	11.227
	SRR3591713	Yellow flower	8.591
SRP173429	SRR8316895	Juvenile bud stage	3.183
	SRR8316896	Juvenile bud stage	5.997
	SRR8316897	Juvenile bud stage	2.837
	SRR8316894	Third green stage	4.012
	SRR8316900	Third green stage	10.613
	SRR8316901	Third green stage	10.764
	SRR8316898	Complete white stage	5.935
	SRR8316899	Complete white stage	7.245
	SRR8316903	Complete white stage	14.222
	SRR8316902	Silver flowering stage	12.103
	SRR8316904	Silver flowering stage	14.738
	SRR8316905	Silver flowering stage	2.919
	SRR8316906	Gold flowering stage	17.777
	SRR8316907	Gold flowering stage	17.560
	SRR8316908	Gold flowering stage	18.376
SRP132670	SRR6706286	Control	13.857
	SRR6706287	Light intensity 50%	14.412
	SRR6706288	Light intensity 20%	11.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.586
	CNS0095593	Slightly white alabastrum(diploid) 2	6.692
	CNS0095594	Slightly white alabastrum(diploid) 3	7.763
	CNS0095595	Whole white alabastrum(diploid) 2	7.112
	CNS0095596	Whole white alabastrum(diploid) 3	10.641
	CNS0095597	Whole white alabastrum(diploid) 4	8.639
	CNS0095598	Silvery flower (diploied) 1	5.639
	CNS0095599	Silvery flower (diploied) 2	5.603
	CNS0095600	Silvery flower (diploied) 3	5.086
	CNS0095601	Golden flower (diploid) 1	4.614
	CNS0095602	Golden flower (diploid) 2	4.585
	CNS0095603	Golden flower (diploid) 3	3.872
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.737
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.259
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.782
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.867
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.670
	CNS0095610	Silvery flower (tetraploid) 1	5.298
	CNS0095611	Silvery flower (tetraploid) 2	3.628
	CNS0095612	Silvery flower (tetraploid) 3	7.361
	CNS0095613	Golden flower (tetraploid) 1	2.543
	CNS0095614	Golden flower (tetraploid) 2	5.176
	CNS0095615	Golden flower (tetraploid) 3	14.446
CRA001975	CRR073297	Stem 1	15.499
	CRR073298	Stem 2	16.810
	CRR073299	Stem 3	16.522
	CRR073300	Leaf 1	26.537
	CRR073301	Leaf 2	25.117
	CRR073302	Leaf 3	20.580
	CRR073303	Juvenile bud 1	34.645
	CRR073304	Juvenile bud 2	51.359
	CRR073305	Juvenile bud 3	37.703
	CRR073306	Third green 1	356.535
	CRR073307	Third green 2	266.315
	CRR073308	Third green 3	333.552
	CRR073309	Second white 1	237.750
	CRR073310	Second white 2	230.782
	CRR073311	Second white 3	334.113
	CRR073312	Silver flowering 1	281.790
	CRR073313	Silver flowering 2	206.866
	CRR073314	Silver flowering 3	158.718
	CRR073315	Gold flowering 1	13.637
	CRR073316	Gold flowering 2	16.689
	CRR073317	Gold flowering 3	12.599
	CRR073318	Tawny withering 1	21.262
	CRR073319	Tawny withering 2	11.233
	CRR073320	Tawny withering 3	14.608