Gene detail

Detail information of GWHGAAZE014371

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010257780.1	7.89595E-95	PREDICTED: uncharacterized protein LOC104597747 [Nelumbo nucifera]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	2E-37	Transcription factor MYB44
trEMBL	tr\|B9HI82\|B9HI82_POPTR	9E-86	Uncharacterized protein {ECO:0000313\|EMBL:EEE89619.1}
TAIR10	AT1G69560.1	6E-60	myb domain protein 105

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	11100898	11102362	+
GWHAAZE00000004	mRNA	11100898	11102362	+
GWHAAZE00000004	exon	11100898	11101273	+
GWHAAZE00000004	exon	11101540	11101995	+
GWHAAZE00000004	exon	11102094	11102362	+
GWHAAZE00000004	CDS	11100898	11101273	+
GWHAAZE00000004	CDS	11101540	11101995	+
GWHAAZE00000004	CDS	11102094	11102362	+

Transcript Sequence
>GWHTAAZE014385 ATGCAACAACAGTACAATACCACCTCCTTCCCCCATGAAAATGTGCCTCCATTAATGCAGAATTTGTCCAACAATACTGATCAAGGAGGTGAAATCAATTGCCATTACTTCTCTTATTTTCATAATATTGATGGGTCTCAAGAAAACAACACTAGTACTAGTGCTGATGACAACATGAACAAGATCAACAACTTCAATGCAGCAGCAGAGAGACCAAATCATCGTCATCATCATCATCATGTGAATAATGGGCAGTCAAAGGCTTGTTCTAGAGGTCATTGGAGACCTGCTGAGGACTCTAAACTTAGGGAACTTGTTTCCCTTTATGGCCCCCAAAACTGGAACCTGATAGCTGACAAGCTCAAAGGAAGATCAGGTAAGAGTTGTAGGTTGAGGTGGTTTAATCAATTGGACCCAAATATAAACAAAAGGGCATTCAGTGAAGAGGAAGAGGATAAACTAATGGCAGCCCACAGAGTTTACGGTAACAAGTGGGCCATGATTGCAAGGCTTTTTCCAGGAAGGACAGATAATGCAGTCAAGAATCACTGGCATGTTGTGATGGCTAGAAAATATAGGGACCGTTCCTCTGCTTATAAAAAGAGAAAACAGAGCCAAACAACACCACCAGTAATAGAAGAAAATTCAAGCTTTGTGAGCAGAGAGACAACAACAGAAACTGCAGAACCAAAAAGACTTGGCTTTCTTGATGGGGTCAGCATTAATAGAGATTACGAGTTGTTGATTGATTCTTCAGGCGACAAACAATTACTATTCCCTCATAAAACTACTGGACAATTTGCAAAACAAATGCCTCTTGATTTATTTTCTGGTTTGAAGGAGGAGAAGGGGTATTATTACGATAATTTAAATCAAGGTTCAGGGGTACTGGGGATGATGGCGATGATGAAAGAGTGGAGTAATTCTGAAATCCCAGAGTACTCAATAATATCAACATCTCAAGTAGGCTCACTGATCAATCAACCATCACCGTCTTCATCAGTATCATCAGTTGCAGATGACACAGTAACCACCTGTTTTCAGACCACTCTCACTCTCTCTCCTCCATTTATAGACTTCCTTGGTGTTGGATCCACGTGA

Network for GWHGAAZE014371

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	94	154	4.20E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.093
	SRR3591709	Stem	0.998
	SRR3591710	White floral bud	0.071
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.290
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.342
	SRR8316896	Juvenile bud stage	0.234
	SRR8316897	Juvenile bud stage	0.406
	SRR8316894	Third green stage	0.208
	SRR8316900	Third green stage	0.067
	SRR8316901	Third green stage	0.053
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.426
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.109
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.619
	CNS0095593	Slightly white alabastrum(diploid) 2	1.099
	CNS0095594	Slightly white alabastrum(diploid) 3	0.386
	CNS0095595	Whole white alabastrum(diploid) 2	0.476
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.105
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.043
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.232
	CNS0095603	Golden flower (diploid) 3	0.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.171
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.776
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.053
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.969
	CRR073298	Stem 2	0.571
	CRR073299	Stem 3	2.527
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.112
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.406
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.070
	CRR073318	Tawny withering 1	0.318
	CRR073319	Tawny withering 2	1.357
	CRR073320	Tawny withering 3	0.048